Browse Element(s) Details


Os.31524.2.S1_at

Description gb:NM_192096.1
DB_XREF= gi:34911275
GEN=P0478H03.31
TID=Os.31524.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.31524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0478H03.31 (P0478H03.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0478H03.31 (P0478H03.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4926011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31524.2.S1_at--747--9971Chr01:28647002..28647026 (25 bp)
TACCTGCTTCATGACATTATCAAAT
LOC_Os01g49260
Os.31524.2.S1_at--669--5671Chr01:28647014..28647038 (25 bp)
GACATTATCAAATCCCAGGAGCTTG
LOC_Os01g49260
Os.31524.2.S1_at--569--10331Chr01:28647018..28647042 (25 bp)
TTATCAAATCCCAGGAGCTTGGCCC
LOC_Os01g49260
Os.31524.2.S1_at--32--3051Chr01:28647024..28647048 (25 bp)
AATCCCAGGAGCTTGGCCCGATGGA
LOC_Os01g49260
Os.31524.2.S1_at--1145--1531Chr01:28647033..28647057 (25 bp)
AGCTTGGCCCGATGGAGATGTACCG
LOC_Os01g49260
Os.31524.2.S1_at--935--6271Chr01:28647049..28647073 (25 bp)
GATGTACCGGACCATGGGCGTCTCC
LOC_Os01g49260
Os.31524.2.S1_at--499--9711Chr01:28647084..28647108 (25 bp)
TCAAGTTCGTCTCTATCAACACTCC
LOC_Os01g49260
Os.31524.2.S1_at--22--9551Chr01:28647095..28647119 (25 bp)
TCTATCAACACTCCGGCTACTGATG
LOC_Os01g49260
Os.31524.2.S1_at--822--2471Chr01:28647101..28647125 (25 bp)
AACACTCCGGCTACTGATGCCGCGG
LOC_Os01g49260
Os.31524.2.S1_at--74--9291Chr01:28647106..28647130 (25 bp)
TCCGGCTACTGATGCCGCGGCAGGC
LOC_Os01g49260
Os.31524.2.S1_at--132--2371Chr01:28647131..28647155 (25 bp)
AAACCGCCGGGCAGGCCCTGTCATG
LOC_Os01g49260
Target Sequence 
TACCTGCTTCATGACATTATCAAATCCCAGGAGCTTGGCCCGATGGAGATGTACCGGACCATGGGCGTCTCCGGGGGCTC
CATCAAGTTCGTCTCTATCAACACTCCGGCTACTGATGCCGCGGCAGGCAAACCGCCGGGCAGGCCCTGTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31524.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis