Browse Element(s) Details


Os.4684.1.S1_at

Description gb:D38231.1
DB_XREF= gi:540534
GEN=RWD
TID=Os.4684.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4684 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RWD mRNA for q group of receptor for activated C-kinase, complete cds.
PROD=q group of receptor for activated C-kinase
FL= gb:AK098877.1 gb:AK060428.1 gb:D38231.1 gb:AK098893.1 gb:AK121587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4929011/11Guanine nucleotide-binding protein beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4684.1.S1_at--826--2331Chr01:28658429..28658453 (25 bp)
AAAGATGGCGTTACCCTGCTGTGGG
LOC_Os01g49290
Os.4684.1.S1_at--106--2791Chr01:28658468..28658492 (25 bp)
AAGAGGCTGTACTCGCTTGACGCGG
LOC_Os01g49290
Os.4684.1.S1_at--1007--8371Chr01:28658545..28658569 (25 bp)
GGCGACCCAGGACTCTATCAAGATC
LOC_Os01g49290
Os.4684.1.S1_at--284--8691Chr01:28658593..28658617 (25 bp)
TGTGCAGGACCTTAAGCCCGAGATC
LOC_Os01g49290
Os.4684.1.S1_at--698--1291Chr01:28659796..28659820 (25 bp)
AGATGCTCTACTGCACAAGCTTGAA
LOC_Os01g49290
Os.4684.1.S1_at--994--831Chr01:28659832..28659856 (25 bp)
ATGGAAGCACCCTCTATGCTGGTTA
LOC_Os01g49290
Os.4684.1.S1_at--503--2811Chr01:28659882..28659906 (25 bp)
AAGATCTCAGGTTTCAGCTACGCCG
LOC_Os01g49290
Os.4684.1.S1_at--62--371Chr01:28659961..28659985 (25 bp)
ATCACCCTAGTGTTCTTTTTGGCTG
LOC_Os01g49290
Os.4684.1.S1_at--742--9751Chr01:28659998..28660022 (25 bp)
TAATCTGCCTGAGTACTTCTGCTTA
LOC_Os01g49290
Os.4684.1.S1_at--193--292Chr12:19430212..19430321 (25 bp)
ATAGGGATCTGTTTTGCACCATGTT
NONE
Os.4684.1.S1_at--226--5091Chr01:28660089..28660113 (25 bp)
GCACCATGTTTTGTTTTGACTTCCT
LOC_Os01g49290
Target Sequence 
AAAGATGGCGTTACCCTGCTGTGGGACTTGGCTGAGGGCAAGAGGCTGTACTCGCTTGACGCGGGTTCCATCATTCACTC
GCTCTGCTTCTCGCCCAACCGCTACTGGCTCTGCGCGGCGACCCAGGACTCTATCAAGATCTGGGATCTTGAGTCAAAGC
ACATTGTGCAGGACCTTAAGCCCGAGATCCCTGTCTCCAAGAACCAGATGCTCTACTGCACAAGCTTGAACTGGAGCGCA
GATGGAAGCACCCTCTATGCTGGTTACACAGATGGAACCATCAGGATCTACAAGATCTCAGGTTTCAGCTACGCCGGCTA
GAGATGGGGAGTGTTGTTTTAGTTATCGCGTTCTGGTAAACGACTGTGGTATCACCCTAGTGTTCTTTTTGGCTGTTTGA
AAGGCATTAATCTGCCTGAGTACTTCTGCTTAATTTACCCATCTATGTAGTAGCTCCAGTACTGAGCTCATGGATACTGT
GGAATAGGGATCTGTTTTGCACCATGTTTTGTTTTGACTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis