Browse Element(s) Details


Os.31524.1.S1_at

Description gb:AK107195.1
DB_XREF= gi:32992404
TID=Os.31524.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0478H03.31 (P0478H03.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-A08, full insert sequence.
FL= gb:AK107195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4926010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49290Os.4684.1.S1_at11/111+28657648..28660165Guanine nucleotide-binding protein beta subunit, putative, expressed
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31524.1.S1_at--832--5271Chr01:28647709..28647733 (25 bp)
GAATGTTCATCAAGGCAGTGCGGAG
LOC_Os01g49260
Os.31524.1.S1_at--648--5011Chr01:28647723..28647747 (25 bp)
GCAGTGCGGAGTTGGGATTCTATAT
LOC_Os01g49260
Os.31524.1.S1_at--46--5191Chr01:28647748..28647772 (25 bp)
GCAAGGTTGCTTATTACTTTCTAGG
LOC_Os01g49260
Os.31524.1.S1_at--1132--9351Chr01:28647775..28647799 (25 bp)
TCGTGTTTTGGGTCGAAGGCACTTC
LOC_Os01g49260
Os.31524.1.S1_at--610--891Chr01:28647791..28647815 (25 bp)
AGGCACTTCCCAACTCGTAATTTAT
LOC_Os01g49260
Os.31524.1.S1_at--889--2531Chr01:28647802..28647826 (25 bp)
AACTCGTAATTTATCGTCACTCTAT
LOC_Os01g49260
Os.31524.1.S1_at--823--7071Chr01:28647817..28647841 (25 bp)
GTCACTCTATATAGCCTAGGACCCT
LOC_Os01g49260
Os.31524.1.S1_at--332--971Chr01:28647834..28647858 (25 bp)
AGGACCCTATTGATGCACTTGCGAA
LOC_Os01g49260
Os.31524.1.S1_at--1084--2551Chr01:28647858..28647882 (25 bp)
AACTGATTATGTGCTTCCTTATTGA
LOC_Os01g49260
Os.31524.1.S1_at--490--51Chr01:28647878..28647902 (25 bp)
ATTGATTCTGTATCCGTGCGACGAA
LOC_Os01g49260
Os.31524.1.S1_at--632--7291Chr01:28647893..28647916 (24 bp)
GTGCGACGAACTAATCTAGCTACTC
NONE
Target Sequence 
GAATGTTCATCAAGGCAGTGCGGAGTTGGGATTCTATATGCAAGGTTGCTTATTACTTTCTAGGTATCGTGTTTTGGGTC
GAAGGCACTTCCCAACTCGTAATTTATCGTCACTCTATATAGCCTAGGACCCTATTGATGCACTTGCGAAACTGATTATG
TGCTTCCTTATTGATTCTGTATCCGTGCGACGAACTAATCTAGCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis