Browse Element(s) Details


Os.36960.2.S1_x_at

Description gb:NM_192093.1
DB_XREF= gi:34911269
GEN=P0478H03.28
TID=Os.36960.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36960 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) limonoid UDP-glucosyltransferase-like protein (P0478H03.28), mRNA.
PROD=limonoid UDP-glucosyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4923011/11Limonoid UDP-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed
LOC_Os01g49260Os.31524.2.S1_at11/111+28646062..28647909expressed protein
LOC_Os01g49260Os.31524.1.S1_at10/111+28646062..28647909expressed protein
LOC_Os01g49270OsAffx.23724.1.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49270OsAffx.23724.2.S1_x_at11/111+28649509..28651836expressed protein
LOC_Os01g49280Os.23770.1.A1_s_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280OsAffx.2280.1.S1_at11/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49280Os.41685.1.S1_x_at10/111+28652218..28655104Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
GO:0047215molecular_functionindole-3-acetate beta-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36960.2.S1_x_at--565--9371Chr01:28630822..28630846 (25 bp)
TCGACGAGCTCGAGCGCGTGGCCAT
LOC_Os01g49230
Os.36960.2.S1_x_at--447--4811Chr01:28630860..28630884 (25 bp)
GCTCATTTGCCGGTGGTGCCAGTCG
LOC_Os01g49230
Os.36960.2.S1_x_at--916--491Chr01:28630961..28630985 (25 bp)
ATCGGTGGTGTTCGTGGCGTTCGGG
LOC_Os01g49230
Os.36960.2.S1_x_at--538--9611Chr01:28630996..28631020 (25 bp)
TCATCGGCCGTGACGAAACGGCAGA
LOC_Os01g49230
Os.36960.2.S1_x_at--206--10671Chr01:28631055..28631079 (25 bp)
TTCCTGTGGGTCGTGCGCGACGACA
LOC_Os01g49230
Os.36960.2.S1_x_at--639--1571Chr01:28631086..28631110 (25 bp)
AGCTACACCCGCACGGCGAGAGCGG
LOC_Os01g49230
Os.36960.2.S1_x_at--523--8511Chr01:28631205..28631229 (25 bp)
TGGAACTCGACCACGGAGGCGCTGG
LOC_Os01g49230
Os.36960.2.S1_x_at--367--9951Chr01:28631253..28631277 (25 bp)
TACCCGGCGTGGTCCGACCAGATCA
LOC_Os01g49230
Os.36960.2.S1_x_at--950--5831Chr01:28631268..28631292 (25 bp)
GACCAGATCACCAACGCCAAGTTAC
LOC_Os01g49230
Os.36960.2.S1_x_at--902--1811Chr01:28631281..28631305 (25 bp)
ACGCCAAGTTACTGGCGGACGTGTA
LOC_Os01g49230
Os.36960.2.S1_x_at--230--9371Chr01:28631333..28631357 (25 bp)
TCGACGAGGTCATGAGCGGGCCGGA
LOC_Os01g49230
Target Sequence 
TCGACGAGCTCGAGCGCGTGGCCATCGAGGCGCTCCGCGCTCATTTGCCGGTGGTGCCAGTCGGCCCCCTCTTCGACACC
GGCAGCGGTGCGGGCGAAGACGACGACTGCGTGGCGTGGCTGGACGCGCAGCCGCCGCGATCGGTGGTGTTCGTGGCGTT
CGGGAGCGTCGTCGTCATCGGCCGTGACGAAACGGCAGAGGTCGCGGAGGGCCTCGCGAGCACGGGGCATCCGTTCCTGT
GGGTCGTGCGCGACGACAGCCGCGAGCTACACCCGCACGGCGAGAGCGGCGGCGGCGGCGACAAGGGCAAGGTGGTGGCG
TGGTGCGAGCAGCGGCGAGTGCTCGCGCACCCCGCCGTCGGTTGCTTCGTGACGCACTGCGGGTGGAACTCGACCACGGA
GGCGCTGGCGGCGGGCGTGCCGGTCGTCGCCTACCCGGCGTGGTCCGACCAGATCACCAACGCCAAGTTACTGGCGGACG
TGTACGGCGTCGGTGTCCGGCTCCCGGTGCGTCGACGAGGTCATGAGCGGGCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36960.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis