Browse Element(s) Details


Os.29003.1.S1_x_at

Description gb:AK110784.1
DB_XREF= gi:32995993
TID=Os.29003.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cytokinesis regulating protein - like (P0478H03.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C05, full insert sequence.
FL= gb:AK110784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4921011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed
LOC_Os01g49190Os.10496.2.S1_x_at11/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49190Os.10496.1.S1_at10/111+28604547..28608863ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os01g49200Os.33042.1.S1_at11/111+28609661..28613939Microtubule associated protein containing protein, expressed
LOC_Os01g49210Os.29003.2.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_x_at11/111+28616229..28617119expressed protein
LOC_Os01g49210Os.29003.1.S1_at11/111+28616229..28617119expressed protein
LOC_Os01g49230Os.36960.2.S1_x_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49230Os.36960.1.S1_at11/111+28630118..28631687Limonoid UDP-glucosyltransferase, putative, expressed
LOC_Os01g49240Os.30035.1.S1_at11/111+28634500..28636348UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g49250Os.37407.1.S1_at11/111+28638902..28644122SLL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29003.1.S1_x_at--963--4231Chr01:28616796..28616820 (25 bp)
CCGAGGCGGAGATCAGCGAGCTCAA
LOC_Os01g49210
Os.29003.1.S1_x_at--1081--4071Chr01:28616812..28616836 (25 bp)
CGAGCTCAAGCAGCGGATCAGCGGC
LOC_Os01g49210
Os.29003.1.S1_x_at--499--891Chr01:28616849..28616873 (25 bp)
AGGCGGCCGACGTTGGAGACCATAC
LOC_Os01g49210
Os.29003.1.S1_x_at--207--5851Chr01:28616866..28616890 (25 bp)
GACCATACACGAGGAGAGCTACGCT
LOC_Os01g49210
Os.29003.1.S1_x_at--395--1371Chr01:28616880..28616904 (25 bp)
AGAGCTACGCTCCAGCAGCAAGATG
LOC_Os01g49210
Os.29003.1.S1_x_at--703--6491Chr01:28616910..28616934 (25 bp)
GATAGTTTAATTCAGTAGCCAACAA
LOC_Os01g49210
Os.29003.1.S1_x_at--417--1171Chr01:28616934..28616958 (25 bp)
AGTAACACAACTGGGATGGCAAAAG
LOC_Os01g49210
Os.29003.1.S1_x_at--807--8231Chr01:28616951..28616975 (25 bp)
GGCAAAAGGCCATTTCTCGTAATAT
LOC_Os01g49210
Os.29003.1.S1_x_at--671--4431Chr01:28616959..28616983 (25 bp)
GCCATTTCTCGTAATATTTTTTCCT
LOC_Os01g49210
Os.29003.1.S1_x_at--913--10291Chr01:28616978..28617002 (25 bp)
TTTCCTTCTTTTGAACGCTATGTAA
LOC_Os01g49210
Os.29003.1.S1_x_at--150--8752Chr01:28616998..28617022 (25 bp)
TGTAAAATATTTCTTTCTTTGGCGC
LOC_Os01g49210
Target Sequence 
CCGAGGCGGAGATCAGCGAGCTCAAGCAGCGGATCAGCGGCGGCCGCCGGTCGAGGCGGCCGACGTTGGAGACCATACAC
GAGGAGAGCTACGCTCCAGCAGCAAGATGCTAGTGATAGTTTAATTCAGTAGCCAACAAGTAACACAACTGGGATGGCAA
AAGGCCATTTCTCGTAATATTTTTTCCTTCTTTTGAACGCTATGTAAAATATTTCTTTCTTTGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29003.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis