Browse Element(s) Details


Os.35041.2.S1_x_at

Description gb:NM_192105.1
DB_XREF= gi:34911293
GEN=P0519D04.16
TID=Os.35041.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35041 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to formyl transferase (P0519D04.16), mRNA.
PROD=similar to formyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4933011/11methionyl-tRNA formyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49300NANA1+28665123..28669321retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g49310Os.14151.1.S1_at10/111+28672690..28677882expressed protein
LOC_Os01g49310Os.41682.1.S1_x_at10/111+28672690..28677882expressed protein
LOC_Os01g49320Os.17479.1.S1_at11/111+28681672..28682915Acidic endochitinase precursor, putative, expressed
LOC_Os01g49330Os.35041.2.S1_x_at11/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49330Os.35041.1.S1_at10/111+28690886..28694881methionyl-tRNA formyltransferase family protein, expressed
LOC_Os01g49340Os.32007.1.S1_x_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.54637.1.S1_at11/111+28694783..28697378expressed protein
LOC_Os01g49340Os.32007.1.S1_at10/111+28694783..28697378expressed protein
LOC_Os01g49350Os.33804.2.S1_x_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.33804.1.S1_at11/111+28697767..28701355expressed protein
LOC_Os01g49350Os.25168.2.A1_at3/111+28697767..28701355expressed protein
LOC_Os01g49350OsAffx.6448.1.S1_at1/111+28697767..28701355expressed protein
LOC_Os01g49360OsAffx.11528.1.S1_at11/111+28703433..28706534FAD-binding domain-containing protein, putative, expressed
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009152biological_processpurine ribonucleotide biosynthesis
GO:0008864molecular_functionformyltetrahydrofolate deformylase activity
GO:0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35041.2.S1_x_at--925--1191Chr01:28692275..28692299 (25 bp)
AGTTTGCTGCCTCTATATCGTGGTG
LOC_Os01g49330
Os.35041.2.S1_x_at--672--5531Chr01:28692422..28692446 (25 bp)
GAAACAGGTGTTTCCCTTGCATATA
LOC_Os01g49330
Os.35041.2.S1_x_at--639--10731Chr01:28692438..28692462 (25 bp)
TTGCATATACTGTCCGTGCCTTGGA
LOC_Os01g49330
Os.35041.2.S1_x_at--60--551Chr01:28692462..28692486 (25 bp)
ATGCGGGTCCAGTTATTGCTTCTGA
LOC_Os01g49330
Os.35041.2.S1_x_at--500--2931Chr01:28692960..28692983 (24 bp)
AAGGCACCGGAGCTGCTTGCTATAT
LOC_Os01g49330
Os.35041.2.S1_x_at--298--1551Chr01:28693212..28693236 (25 bp)
AGCTATTGCTTCATGAACTACCCTC
LOC_Os01g49330
Os.35041.2.S1_x_at--907--5471Chr01:28693226..28693250 (25 bp)
GAACTACCCTCTATTCTTGATGGAA
LOC_Os01g49330
Os.35041.2.S1_x_at--560--6991Chr01:28694079..28694103 (25 bp)
GTACGAGCCTTTGCAGGTTGGCCAG
LOC_Os01g49330
Os.35041.2.S1_x_at--964--7911Chr01:28694094..28694118 (25 bp)
GGTTGGCCAGGAACTCGCGCAAAGT
LOC_Os01g49330
Os.35041.2.S1_x_at--995--7611Chr01:28694140..28694164 (25 bp)
GGGAACCCGATGTGCTTGAGATTAA
LOC_Os01g49330
Os.35041.2.S1_x_at--979--2931Chr01:28694178..28694202 (25 bp)
AAGGCTTGCGCATCCTGTGACAAAA
LOC_Os01g49330
Target Sequence 
AGTTTGCTGCCTCTATATCGTGGTGCAGCACCTGTGCAGAGGGCATTGCAGGACGGTGTTGAAGAAACAGGTGTTTCCCT
TGCATATACTGTCCGTGCCTTGGATGCGGGTCCAGTTATTGCTTCTGAAAAGTTTGCTGTAGATGAGTATATTAAGGCAC
CGGAGCTGCTTGCTATATTGTTCAACTTAGGATCCAAGCTATTGCTTCATGAACTACCCTCTATTCTTGATGGAACGGCT
AAAGAAAAGGCAAAACCACAAGATGACTCCAAAATTACACATGCACCGAAGCTGAATTCTGATGAGTCATGGTTGTCATT
CAACCAAGAAGCTAAATTGCTCCATAACAAGGTACGAGCCTTTGCAGGTTGGCCAGGAACTCGCGCAAAGTTGCAGCTTG
TGAACCAAAATGGGGAACCCGATGTGCTTGAGATTAAGGTTATCAGCACGAAGGCTTGCGCATCCTGTGACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35041.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis