Browse Element(s) Details


Os.53602.1.S1_at

Description gb:AK073525.1
DB_XREF= gi:32983548
TID=Os.53602.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046F01, full insert sequence.
FL= gb:AK073525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4911011/11protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g490601/11Protein prenyltransferase alpha subunit repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53602.1.S1_at--543--6151Chr01:28561028..28561052 (25 bp)
GAGGTTTGAAGTTTGGCCATCGTGA
LOC_Os01g49110
Os.53602.1.S1_at--1037--8431Chr01:28561042..28561066 (25 bp)
GGCCATCGTGATTCTGACATTTTAT
LOC_Os01g49110
Os.53602.1.S1_at--809--10411Chr01:28561074..28561098 (25 bp)
TTATTGTGTATGTTGTTCCCTTGCG
LOC_Os01g49110
Os.53602.1.S1_at--238--10651Chr01:28561089..28561113 (25 bp)
TTCCCTTGCGTTGATTGTGCTGATT
LOC_Os01g49110
Os.53602.1.S1_at--492--8691Chr01:28561104..28561128 (25 bp)
TGTGCTGATTCGTTGGTGTAGTCTT
LOC_Os01g49110
Os.53602.1.S1_at--704--9392Chr01:28561113..28561137 (25 bp)
TCGTTGGTGTAGTCTTTGTGGATCC
LOC_Os01g49110
Os.53602.1.S1_at--517--6071Chr01:28561566..28561590 (25 bp)
GAGTTACTGATGAAACGACGACATA
LOC_Os01g49110
Os.53602.1.S1_at--664--1171Chr01:28561600..28561624 (25 bp)
AGTACTGTAGCCTGTATGGTCTAAT
LOC_Os01g49110
Os.53602.1.S1_at--805--9751Chr01:28561621..28561645 (25 bp)
TAATATGTTCATTGTTCTGCTTTTC
LOC_Os01g49110
Os.53602.1.S1_at--281--10611Chr01:28561643..28561667 (25 bp)
TTCTGTTGCAGTCTTCTTTATGTAG
LOC_Os01g49110
Os.53602.1.S1_at--1157--5351Chr01:28561678..28561702 (25 bp)
GAAGAAATGGCTATGCACATTGTAC
LOC_Os01g49110
Target Sequence 
GAGGTTTGAAGTTTGGCCATCGTGATTCTGACATTTTATCCATAATTTATTGTGTATGTTGTTCCCTTGCGTTGATTGTG
CTGATTCGTTGGTGTAGTCTTTGTGGATCCATCGTATTTTCCTCTCGCAATGGTGGGTGAAGTTCTCGCTCAGCAGTGAG
GAAACAGAGTGTGCTGCAGGCACTTCGCTGGTGGACCTCTTCCTAGCCCAGGAGATATACCTCCTGTCAGACCGCCTGAA
TGCTCCTGCCGATGAATTTGGTGAGGCATGTGTTCAAACTGAGCTTGCAGCCCTCTACATTCTCTGGATATCAAAGCAAG
TTCCGGCTGTGAAACTAAAGCTGGAAAAAAGGCTACATTCGGTGGGGAGCCTGGAGGATGTCTTAGCAAGGGCCTGCCCA
CTATTGAAAGCAGAACAAGGACATGCATTGCAGCATACGTACAGAGTTACTGATGAAACGACGACATATGGTTATCTAGT
ACTGTAGCCTGTATGGTCTAATATGTTCATTGTTCTGCTTTTCTGTTGCAGTCTTCTTTATGTAGTGGAAATACTGAAGA
AATGGCTATGCACATTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis