Browse Element(s) Details


Os.54277.1.S1_a_at

Description gb:AB110983.1
DB_XREF= gi:31339299
GEN=ORC4
TID=Os.54277.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54277 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ORC4 mRNA for origin recognition complex 4, complete cds.
PROD=origin recognition complex 4
FL= gb:AB110983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g490108/11Origin recognition complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54277.1.S1_a_at--719--5091NONE
GCACGGATTACTAGCATTTTCAATG
NONE
Os.54277.1.S1_a_at--240--7931NONE
GGATTACTAGCATTTTCAATGACAA
NONE
Os.54277.1.S1_a_at--186--10591Chr01:28491721..28491745 (25 bp)
TTCTCAGCTCCCTCACTGATGCTGA
LOC_Os01g49010
Os.54277.1.S1_a_at--1026--5131Chr01:28491747..28491771 (25 bp)
GCAACAACAAGCCACATCCTTAGAT
LOC_Os01g49010
Os.54277.1.S1_a_at--276--2211NONE
ACAAGCCACATCCTTAGATTTCTTT
NONE
Os.54277.1.S1_a_at--442--10451Chr01:28491766..28491887 (25 bp)
TTAGATTTCTTTTCAGAGTGGTGTC
LOC_Os01g49010
Os.54277.1.S1_a_at--1127--10151Chr01:28491941..28491965 (25 bp)
TATCTTCGATGCAGAGGCAGCCTAA
LOC_Os01g49010
Os.54277.1.S1_a_at--30--6331Chr01:28491948..28491972 (25 bp)
GATGCAGAGGCAGCCTAAGATGGAC
LOC_Os01g49010
Os.54277.1.S1_a_at--133--1231Chr01:28492201..28492225 (25 bp)
AGTTCATACAACTTTATCACTATTA
LOC_Os01g49010
Os.54277.1.S1_a_at--352--2411Chr01:28492333..28492357 (25 bp)
AAAACGTCGGACAAATATTCACACA
LOC_Os01g49010
Os.54277.1.S1_a_at--375--4011Chr01:28492337..28492361 (25 bp)
CGTCGGACAAATATTCACACACTGT
LOC_Os01g49010
Target Sequence 
GCACGGATTACTAGCATTTTCAATGACAAAAAGTTCAAAGGAATTCTCAGCTCCCTCACTGATGCTGACGCAACAACAAG
CCACATCCTTAGATTTCTTTTCAGAGTGGTGTCATACATGGACATAGATTCTGGACTTCTGTCAATGCAAAGCTTCATGA
ATGCGCTATCTTCGATGCAGAGGCAGCCTAAGATGGACGGTTTGCAAGATCTCTCCATTTTGGAACTATACATTCTTGTA
TGCATGAACAGGCTAGAAGATAAGGAGAAAAGTTCATACAACTTTATCACTATTATGAAAGAGTACAAATCTGTGCAGGA
TGCCTACAAAACGTCGGACAAATATTCACACACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54277.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis