Browse Element(s) Details


OsAffx.21499.1.S1_at

Description gb:NM_192066.1
DB_XREF= gi:34911215
GEN=P0445E10.6
TID=OsAffx.21499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative phosphatidylserine synthase (P0445E10.6), mRNA.
PROD=putative phosphatidylserine synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4902010/11Phosphatidyl serine synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006659biological_processphosphatidylserine biosynthesis
GO:0003882molecular_functionCDP-diacylglycerol-serine O-phosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21499.1.S1_at--302--5551Chr01:28496513..28496537 (25 bp)
GAAACGTGATGATGCCAGGCAGTTT
LOC_Os01g49020
OsAffx.21499.1.S1_at--736--1191Chr01:28496493..28496517 (25 bp)
AGTTTATGAAGCACCTTCACCCTGG
LOC_Os01g49020
OsAffx.21499.1.S1_at--971--7071Chr01:28496381..28496502 (25 bp)
TTCACCCTGGTCTCGGAAACTACCA
LOC_Os01g49020
OsAffx.21499.1.S1_at--883--8751Chr01:28496328..28496352 (25 bp)
TGTATGTTCCAGAAAACCCTACCAA
LOC_Os01g49020
OsAffx.21499.1.S1_at--1023--151Chr01:28494139..28494163 (25 bp)
ATTATGTCAGTTCACACCCGCTAAA
LOC_Os01g49020
OsAffx.21499.1.S1_at--309--2971Chr01:28494101..28494125 (25 bp)
AATGGCATCCTTTCATGGAGCCAAG
LOC_Os01g49020
OsAffx.21499.1.S1_at--519--6571Chr01:28494074..28494098 (25 bp)
GATTCATCCAAGTGTTCTGTCTCTG
LOC_Os01g49020
OsAffx.21499.1.S1_at--44--7171Chr01:28494056..28494080 (25 bp)
GTCTCTGCGTCGGTTTCATGACAGT
LOC_Os01g49020
OsAffx.21499.1.S1_at--534--5471Chr01:28494030..28494054 (25 bp)
GAACTTAACACCTTCTTCCTGAAAT
LOC_Os01g49020
OsAffx.21499.1.S1_at--1065--9251Chr01:28494014..28494038 (25 bp)
TCCTGAAATTTTGTCTCTGGATTCC
LOC_Os01g49020
OsAffx.21499.1.S1_at--883--5911Chr01:28493735..28493759 (25 bp)
GAGCTTTTTGTTGGCTTTCGTTAGC
NONE
Target Sequence 
GAAACGTGATGATGCCAGGCAGTTTATGAAGCACCTTCACCCTGGTCTCGGAAACTACCAGAGAGATCATATGGTTCTGA
CTGCCGTATGTATGTTCCAGAAAACCCTACCAACAGATTTATTAATATTCAAGAGACATTGTTTGATGAATTTGTTATTG
CCCATGTCTTGGGTTGGTGGGGTAAGGCAGCACATGCTGCCAAATTTTAACGAGTGTTGGTGGGACAGTATTATATTGGA
TATCATGATATGTAATTGGTTTGGTGTATTTGGGCGGGGATGCACACAGTCCGTTACTTTGATGGCAAAACATACGAATG
GGTTGGACTGGGTAAAAAGGTCATTATGTCAGTTCACACCCGCTAAATGGGATAAGGATCAATGGCATCCTTTCATGGAG
CCAAGGAGATTCATCCAAGTGTTCTGTCTCTGCGTCGGTTTCATGACAGTGGAACTTAACACCTTCTTCCTGAAATTTTG
TCTCTGGATTCCTCCCAGGAACCCCTTGAAAACCAGTGAAGAAGGTGGGAGCTTTTTGTTGGCTTTCGTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis