Browse Element(s) Details


OsAffx.9291.1.S1_at

Description gb:NM_192065.1
DB_XREF= gi:34911213
GEN=P0445E10.5
TID=OsAffx.9291.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0445E10.5 (P0445E10.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4901011/11Origin recognition complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9291.1.S1_at--692--3011Chr01:28491146..28491170 (25 bp)
AATGCACGGATTACTGTATCCTTTG
LOC_Os01g49010
OsAffx.9291.1.S1_at--790--6551Chr01:28491154..28491178 (25 bp)
GATTACTGTATCCTTTGCTCAATGT
LOC_Os01g49010
OsAffx.9291.1.S1_at--315--10151Chr01:28491162..28491186 (25 bp)
TATCCTTTGCTCAATGTGACATGTC
LOC_Os01g49010
OsAffx.9291.1.S1_at--480--7371Chr01:28491177..28491201 (25 bp)
GTGACATGTCACTTTATGTGCTTAC
LOC_Os01g49010
OsAffx.9291.1.S1_at--382--10111Chr01:28491191..28491212 (22 bp)
TATGTGCTTACAAAACCTGCAGAAT
LOC_Os01g49010
OsAffx.9291.1.S1_at--693--2371Chr01:28491203..28491334 (25 bp)
AAACCTGCAGAATGGATGCTGAATG
LOC_Os01g49010
OsAffx.9291.1.S1_at--809--4751Chr01:28491327..28491351 (25 bp)
GCTGAATGTGTTCTTTTCTATGCTA
LOC_Os01g49010
OsAffx.9291.1.S1_at--612--2731Chr01:28491354..28491378 (25 bp)
AAGAAGCCATGGTGGCAAACTGGCA
LOC_Os01g49010
OsAffx.9291.1.S1_at--505--5131Chr01:28491368..28491392 (25 bp)
GCAAACTGGCAATGGCACTGTTTCT
LOC_Os01g49010
OsAffx.9291.1.S1_at--226--5191Chr01:28491376..28491400 (25 bp)
GCAATGGCACTGTTTCTTAGGCTAA
LOC_Os01g49010
OsAffx.9291.1.S1_at--356--10311Chr01:28491388..28491409 (22 bp)
TTTCTTAGGCTAAATGGAACTGCTT
LOC_Os01g49010
Target Sequence 
AATGCACGGATTACTGTATCCTTTGCTCAATGTGACATGTCACTTTATGTGCTTACAAAACCTGCAGAATGGATGCTGAA
TGTGTTCTTTTCTATGCTAAAAAGAAGCCATGGTGGCAAACTGGCAATGGCACTGTTTCTTAGGCTAAATGGAACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis