Browse Element(s) Details


Os.54277.2.S1_s_at

Description gb:AK102997.1
DB_XREF= gi:32988206
TID=Os.54277.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ORC4 mRNA for origin recognition complex 4, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116E22, full insert sequence.
FL= gb:AK102997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4901011/11Origin recognition complex subunit 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49010Os.54277.2.S1_s_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010OsAffx.9291.1.S1_at11/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.54277.1.S1_a_at8/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.51891.1.S1_at2/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49010Os.47327.1.S1_x_at1/111+28488580..28492963Origin recognition complex subunit 4, putative, expressed
LOC_Os01g49020OsAffx.21499.1.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49020OsAffx.21499.2.S1_at10/111+28493911..28499411Phosphatidyl serine synthase family protein
LOC_Os01g49030Os.32753.1.S1_at11/111+28503593..28504604expressed protein
LOC_Os01g49050OsAffx.11524.1.S1_at11/111+28507716..28508525hypothetical protein
LOC_Os01g49050OsAffx.11074.1.S1_s_at1/111+28507716..28508525hypothetical protein
LOC_Os01g49060Os.6811.1.S1_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.6811.1.S1_s_at11/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.41701.1.S1_x_at9/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.33918.1.S1_x_at6/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os01g49060Os.53602.1.S1_at1/111+28514711..28520197Protein prenyltransferase alpha subunit repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54277.2.S1_s_at--1057--9451Chr01:28491904..28491928 (25 bp)
TCTGGACTTCTGTCAATGCAAAGCT
LOC_Os01g49010
Os.54277.2.S1_s_at--1000--651Chr01:28491919..28491943 (25 bp)
ATGCAAAGCTTCATGAATGCGCTAT
LOC_Os01g49010
Os.54277.2.S1_s_at--278--10751Chr01:28491976..28492156 (25 bp)
TTGCAAGATCTCTCCATTTTGGAAC
LOC_Os01g49010
Os.54277.2.S1_s_at--796--7311Chr01:28492318..28492342 (25 bp)
GTGCAGGATGCCTACAAAACGTCGG
LOC_Os01g49010
Os.54277.2.S1_s_at--1010--3871Chr01:28492358..28492476 (25 bp)
CTGTTTGTTTTAGAGCTTTTGAGCA
LOC_Os01g49010
Os.54277.2.S1_s_at--904--10751Chr01:28492470..28492494 (25 bp)
TTGAGCATCTTTTGGATCGCGAGTT
LOC_Os01g49010
Os.54277.2.S1_s_at--700--9331Chr01:28492486..28492510 (25 bp)
TCGCGAGTTGATTAGCTTTGCAGAC
LOC_Os01g49010
Os.54277.2.S1_s_at--735--5831Chr01:28492600..28492760 (25 bp)
GACCTGCCCTGCTGTTTTGCAGAAG
LOC_Os01g49010
Os.54277.2.S1_s_at--158--1231Chr01:28492808..28492832 (25 bp)
AGTTGATACTGGTTCAAGTGCTGGC
LOC_Os01g49010
Os.54277.2.S1_s_at--200--10251Chr01:28492847..28492871 (25 bp)
TTTGTTACTCCCTAACACCGTGTTG
LOC_Os01g49010
Os.54277.2.S1_s_at--1053--2451Chr01:28492860..28492884 (25 bp)
AACACCGTGTTGGAACATCCTATCT
LOC_Os01g49010
Target Sequence 
TCTGGACTTCTGTCAATGCAAAGCTTCATGAATGCGCTATCTTCGATGCAGAGGCAGCCTAAGATGGACAGTTTGCAAGA
TCTCTCCATTTTGGAACTATACATTCTTGTATGCATGAACAGGCTAGAAGATAAGGAGAAAAGTTCATACAACTTTATCA
CTATTATGAAAGAGTACAAATCTGTGCAGGATGCCTACAAAACGTCGGACAAATATTCACACACTGTTTGTTTTAGAGCT
TTTGAGCATCTTTTGGATCGCGAGTTGATTAGCTTTGCAGACAACAAAGGGAGAAATCAGGCGCTTGAATATCGTCCTGT
CAAACTTCTGATATCTTCACGTGAGCTTGCTGAGTCCCTCAAGTTGAACACGACCTGCCCTGCTGTTTTGCAGAAGCTTC
TTGACCGTGAAAGATACATGTAAAAGTTTCTATATGTTTGCTAAGTTGATACTGGTTCAAGTGCTGGCATACTTCTTTCT
TCTTTGTTACTCCCTAACACCGTGTTGGAACATCCTATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54277.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis