Browse Element(s) Details


OsAffx.11074.1.S1_s_at

Description tigr:9629.m01597
TID=OsAffx.11074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1606011/11expressed protein
LOC_Os03g518901/11hypothetical protein
LOC_Os01g490501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein
LOC_Os01g16080Os.16709.1.S1_at9/111+9054660..9057841expressed protein
LOC_Os01g16080Os.16709.2.S1_x_at9/111+9054660..9057841expressed protein
LOC_Os01g16090Os.106.1.S1_at11/111+9060770..9063588RNA recognition motif family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_at11/111+9064634..9067872Translin family protein, expressed
LOC_Os01g16100OsAffx.2017.1.S1_s_at10/111+9064634..9067872Translin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11074.1.S1_s_at--118--6711Chr01:9038644..9038668 (25 bp)
GTTCCTGGAGTTGCTTCTCCAATTA
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--356--4911Chr01:9038632..9038656 (25 bp)
GCTTCTCCAATTAGCACACCAATTC
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--865--2151Chr01:9038617..9038641 (25 bp)
ACACCAATTCTTTTGTGGCGTGAGA
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--945--8472Chr01:28541438..28541460 (23 bp)
TGGCGTGAGACACATATCCACTACC
NONE
OsAffx.11074.1.S1_s_at--1078--571Chr01:9038587..9038611 (25 bp)
ATCCACTACCCTACTTATCACGATG
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--649--10171Chr01:9038572..9038596 (25 bp)
TATCACGATGGTCATGATCAACATG
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--1078--3516Chr01:28541488..28541512 (25 bp)
CATGATATGTTCACTGGCTCAAATA
NONE
OsAffx.11074.1.S1_s_at--25--8311Chr01:9038536..9038560 (25 bp)
GGCTCAAATAATCTCCTTGTGCCGA
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--349--8691Chr01:9038519..9038543 (25 bp)
TGTGCCGAGGATTGTATTACGACTA
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--997--10111Chr01:9038496..9038520 (25 bp)
TATGTACACATCTACGTCTCATGCT
LOC_Os01g16060
OsAffx.11074.1.S1_s_at--536--1891Chr01:9038483..9038507 (25 bp)
ACGTCTCATGCTGAGGATTGCATTT
LOC_Os01g16060
Target Sequence 
GTTCCTGGAGTTGCTTCTCCAATTAGCACACCAATTCTTTTGTGGCGTGAGACACATATCCACTACCCTACTTATCACGA
TGGTCATGATCAACATGATATGTTCACTGGCTCAAATAATCTCCTTGTGCCGAGGATTGTATTACGACTATGTACACATC
TACGTCTCATGCTGAGGATTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11074.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis