Browse Element(s) Details


Os.35495.1.S1_s_at

Description gb:AK067217.1
DB_XREF= gi:32977235
TID=Os.35495.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098K24, full insert sequence.
FL= gb:AK067217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1603011/11ADP-ribosylation factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35495.1.S1_s_at--518--7991Chr01:9018782..9018806 (25 bp)
GGATGAACTCCACAGGATGCTTAAT
LOC_Os01g16030
Os.35495.1.S1_s_at--748--9151Chr01:9017400..9017876 (25 bp)
TGCGCCAACGCCACTGGTATATCCA
LOC_Os01g16030
Os.35495.1.S1_s_at--243--7871Chr01:9017385..9017409 (25 bp)
GGTATATCCAGAGTACATGCGCCAC
LOC_Os01g16030
Os.35495.1.S1_s_at--379--6091Chr01:9017375..9017399 (25 bp)
GAGTACATGCGCCACAACAGGAGAG
LOC_Os01g16030
Os.35495.1.S1_s_at--953--10171Chr01:9017346..9017370 (25 bp)
TATATGAGGGCCTTGACTGGCTCTC
LOC_Os01g16030
Os.35495.1.S1_s_at--1156--5731Chr01:9017332..9017356 (25 bp)
GACTGGCTCTCGAGCAACATTGCAA
LOC_Os01g16030
Os.35495.1.S1_s_at--1146--5131Chr01:9016919..9017343 (25 bp)
GCAACATTGCAAACAAGGCCTGATT
LOC_Os01g16030
Os.35495.1.S1_s_at--950--2451Chr01:9016908..9016928 (21 bp)
AACAAGGCCTGATTGGATGACCAGA
LOC_Os01g16030
Os.35495.1.S1_s_at--1043--10851Chr01:9016896..9016920 (25 bp)
TTGGATGACCAGAATACCACATTAC
LOC_Os01g16030
Os.35495.1.S1_s_at--1140--6511Chr01:9016820..9016844 (25 bp)
GATTTGGATTATTATTTCACTGGAG
LOC_Os01g16030
Os.35495.1.S1_s_at--519--6791Chr01:9016745..9016769 (25 bp)
GTTATGTTACCTAGCTACTCTCTAC
LOC_Os01g16030
Target Sequence 
GGATGAACTCCACAGGATGCTTAATGAGGATGAGTTGAGGGATGCGGTGTTGCTGGTTTTTGCTAACAAGCAAGATCTTC
CTAATGCAATGAATGCTGCTGAGATCACAGATAAGCTTGGTCTCCATTCCCTGCGCCAACGCCACTGGTATATCCAGAGT
ACATGCGCCACAACAGGAGAGGGTTTATATGAGGGCCTTGACTGGCTCTCGAGCAACATTGCAAACAAGGCCTGATTGGA
TGACCAGAATACCACATTACNTAGCAGNTGCATTTTCTGGAGAANCGGAGGAGATGGTCATTTTNGATACTGAGATTTGG
ATTATTATTTCACTGGAGNGNTTCGNTGNATATATTGNATTTCTTCGNTAGGCTTTTCANATCTGGTTTGTTATGTTACC
TAGCTACTCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35495.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis