Browse Element(s) Details


Os.22825.1.A1_at

Description gb:BI305804
DB_XREF= gi:14981113
DB_XREF=NL_1_M22
CLONE=NL_1_M22
TID=Os.22825.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.22825 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5189011/11hypothetical protein
LOC_Os01g160601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51830Os.7080.1.S1_at10/113+29674844..29680460DnaJ domain containing protein, expressed
LOC_Os03g51840OsAffx.25681.1.S1_at11/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51840OsAffx.26085.1.S1_x_at1/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51850Os.40855.5.S1_x_at10/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_at9/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_x_at6/113+29686219..29688991hypothetical protein
LOC_Os03g51870Os.16055.1.S1_at11/113+29692492..29695814FHA domain containing protein, expressed
LOC_Os03g51880Os.54926.1.S1_at11/113+29696280..29698422expressed protein
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22825.1.A1_at--302--9111Chr03:29700992..29701016 (25 bp)
TGCTGCACGTGAGGTAGGGCTAATT
LOC_Os03g51890
Os.22825.1.A1_at--471--1071Chr03:29700977..29701001 (25 bp)
AGGGCTAATTGCAGCCTTGGGTACT
LOC_Os03g51890
Os.22825.1.A1_at--180--10851Chr03:29700961..29700985 (25 bp)
TTGGGTACTGCCCTACTTGCTAGAC
LOC_Os03g51890
Os.22825.1.A1_at--557--9891Chr03:29700948..29700972 (25 bp)
TACTTGCTAGACAACACGATCGTAG
LOC_Os03g51890
Os.22825.1.A1_at--554--6391Chr03:29700931..29700955 (25 bp)
GATCGTAGCATTGTCAAGGCACTAG
LOC_Os03g51890
Os.22825.1.A1_at--713--931Chr03:29700915..29700939 (25 bp)
AGGCACTAGGCATGCTATGGATCTT
LOC_Os03g51890
Os.22825.1.A1_at--446--10111Chr03:29700900..29700924 (25 bp)
TATGGATCTTCGATGCCGATTTCCT
LOC_Os03g51890
Os.22825.1.A1_at--60--4513Chr03:29700886..29700910 (25 bp)
GCCGATTTCCTCGTGCCGAGAAGTA
LOC_Os03g51890
Os.22825.1.A1_at--1004--2011Chr03:29700847..29700871 (25 bp)
ACTACACGTATTTTTCGTCTTGAGG
LOC_Os03g51890
Os.22825.1.A1_at--427--7013Chr03:29700807..29700831 (25 bp)
GTACTCTACATCTGATTGTGTTAGC
LOC_Os03g51890
Os.22825.1.A1_at--668--2091Chr03:29700773..29700797 (25 bp)
ACATCTACCGTCTCGTGCTGAGGAA
LOC_Os03g51890
Target Sequence 
TGCTGCACGTGAGGTAGGGCTAATTGCAGCCTTGGGTACTGCCCTACTTGCTAGACAACACGATCGTAGCATTGTCAAGG
CACTAGGCATGCTATGGATCTTCGATGCCGATTTCCTCGTGCCGAGAAGTAGGAGGATCTATAAAACTACACGTATTTTT
CGTCTTGAGGATTAGGATGGTATATGTACTCTACATCTGATTGTGTTAGCACTATGTACACATCTACCGTCTCGTGCTGA
GGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22825.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis