Browse Element(s) Details


OsAffx.25682.1.S1_at

Description tigr:9631.m05072
TID=OsAffx.25682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g518908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51830Os.7080.1.S1_at10/113+29674844..29680460DnaJ domain containing protein, expressed
LOC_Os03g51840OsAffx.25681.1.S1_at11/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51840OsAffx.26085.1.S1_x_at1/113+29680905..29682710pentatricopeptide, putative
LOC_Os03g51850Os.40855.5.S1_x_at10/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_at9/113+29686219..29688991hypothetical protein
LOC_Os03g51850Os.40360.1.S1_x_at6/113+29686219..29688991hypothetical protein
LOC_Os03g51870Os.16055.1.S1_at11/113+29692492..29695814FHA domain containing protein, expressed
LOC_Os03g51880Os.54926.1.S1_at11/113+29696280..29698422expressed protein
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25682.1.S1_at--196--5171Chr03:29705865..29705889 (25 bp)
GCAATAGTGGCGGTTTCCTGCGGAC
LOC_Os03g51890
OsAffx.25682.1.S1_at--1113--7231NONE
GTCGCCTGACAGTTGTTGGGCTCAT
NONE
OsAffx.25682.1.S1_at--244--6651Chr03:29705060..29705542 (25 bp)
GTTGTTGGGCTCATCCAAGTATTTG
LOC_Os03g51890
OsAffx.25682.1.S1_at--57--1051Chr03:29702698..29702718 (21 bp)
AGGTGCTCATGTGTTACACGTTCCT
LOC_Os03g51890
OsAffx.25682.1.S1_at--376--1411Chr03:29702095..29702115 (21 bp)
ACACGTTCCTCCTCCATTTTAGCTT
LOC_Os03g51890
OsAffx.25682.1.S1_at--793--1451Chr03:29701846..29701870 (25 bp)
AGAAGAGGCGCTATTAGCCACGGTT
LOC_Os03g51890
OsAffx.25682.1.S1_at--853--10211Chr03:29701835..29701859 (25 bp)
TATTAGCCACGGTTGGTCGCACTAT
LOC_Os03g51890
OsAffx.25682.1.S1_at--171--6631Chr03:29701824..29701848 (25 bp)
GTTGGTCGCACTATGCTTGTCTGCA
LOC_Os03g51890
OsAffx.25682.1.S1_at--562--4931Chr03:29701815..29701834 (20 bp)
GCTTGTCTGCATAGGTGGTACTCAT
LOC_Os03g51890
OsAffx.25682.1.S1_at--951--3831NONE
CTGCATAGGTGGTACTCATGTGCTG
NONE
OsAffx.25682.1.S1_at--23--9551NONE
TCTATAAGGTAGGTGTTCGTGCGTT
NONE
Target Sequence 
GCAATAGTGGCGGTTTCCTGCGGACAAAGGGGGAGAGATGGTAGCAACAACGGTTGGCAGCACGAGCTTGAGTCGCCTGA
CAGTTGTTGGGCTCATCCAAGTATTTGTCTCTTCTATCGATTGGCATGTAGTGATTTAGTGCCTTCCTCTGGATTGTGCA
CACAAGAACTGTTGGCCAGGTTCCCCCTCCACTTTAGCTTAAGCTCTATTAGTGACGATGAGCAACCCATAACCATGGAG
ATCATCTATTTCTTCTATAAGGTGCTCATGTGTTACACGTTCCTCCTCCATTTTAGCTTAAGCTCCATTGGTAACGACGA
GCAACCCACAACCATGGAGATCAACTATTTATATAAGTTAAGAGAGGGCAAGATAGAAGAGGCGCTATTAGCCACGGTTG
GTCGCACTATGCTTGTCTGCATAGGTGGTACTCATGTGCTGCACGTGAGGTTTCCCCTCCACTTTAGCTTAAGCTCCATT
GGTGACGACGAGCAACCCACAACCATGGAGATCAACTATTTCTATAAGGTAGGTGTTCGTGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis