Browse Element(s) Details


Os.24540.1.A1_at

Description gb:CB631822
DB_XREF= gi:29626811
DB_XREF=OSIIEb09K06.r
CLONE=OSIIEb09K06
TID=Os.24540.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24540 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_172483.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5191011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51890Os.22825.1.A1_at11/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.25682.1.S1_at8/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11524.1.S1_at2/113+29699422..29706412hypothetical protein
LOC_Os03g51890OsAffx.11074.1.S1_s_at1/113+29699422..29706412hypothetical protein
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51920Os.17136.1.S1_at11/113+29735174..29737573expressed protein
LOC_Os03g51930Os.19523.1.S1_at11/113+29739046..29741681expressed protein
LOC_Os03g51940NANA3+29743049..29743348NA
LOC_Os03g51950Os.23313.1.S1_x_at11/113+29745306..29748361expressed protein
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24540.1.A1_at--591--10031Chr03:29726158..29726182 (25 bp)
TAGACATCTTGCTTTCTACGGAGTC
LOC_Os03g51910
Os.24540.1.A1_at--586--4871Chr03:29726148..29726172 (25 bp)
GCTTTCTACGGAGTCGACCCAGGAT
LOC_Os03g51910
Os.24540.1.A1_at--1139--2851Chr03:29726122..29726146 (25 bp)
AAGTGCCCTCGTTGCTCATTTTAAC
LOC_Os03g51910
Os.24540.1.A1_at--1102--3771Chr03:29726115..29726139 (25 bp)
CTCGTTGCTCATTTTAACCAAGGAA
LOC_Os03g51910
Os.24540.1.A1_at--536--3211Chr03:29726097..29726121 (25 bp)
CAAGGAATCATGCAGCCAGAAATGC
LOC_Os03g51910
Os.24540.1.A1_at--569--9211Chr03:29726061..29726085 (25 bp)
TCCAATCCTGCAGATGTTTTGCAGG
LOC_Os03g51910
Os.24540.1.A1_at--618--3551Chr03:29725933..29726044 (25 bp)
CATCTCCACAGTTAACCAGATACCT
LOC_Os03g51910
Os.24540.1.A1_at--989--291Chr03:29725914..29725938 (25 bp)
ATACCTGCCATGTGGGAAGGACTTC
LOC_Os03g51910
Os.24540.1.A1_at--405--8131Chr03:29725896..29725920 (25 bp)
GGACTTCAGAACATTCCTCACTTGA
LOC_Os03g51910
Os.24540.1.A1_at--545--2511Chr03:29725887..29725911 (25 bp)
AACATTCCTCACTTGAACTACAACC
LOC_Os03g51910
Os.24540.1.A1_at--801--2531Chr03:29725872..29725896 (25 bp)
AACTACAACCCTGGTGGCGCAATGG
LOC_Os03g51910
Target Sequence 
TAGACATCTTGCTTTCTACGGAGTCGACCCAGGATCNAAGTGCCCTCGTTGCTCATTTTAACCAAGGAATCATGCAGCCA
GAAATGCTGTGTAATNGTTTCCAATCCTGCAGATGTTTTGCAGGGGACAACAATTCAGGNCATCTCCACAGTTAACCAGA
TACCTGCCATGTGGGAAGGACTTCAGAACATTCCTCACTTGAACTACAACCCTGGTGGCGCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24540.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis