Browse Element(s) Details


Os.19523.1.S1_at

Description gb:AK107548.1
DB_XREF= gi:32992757
TID=Os.19523.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-A06, full insert sequence.
FL= gb:AK107548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5193011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51920Os.17136.1.S1_at11/113+29735174..29737573expressed protein
LOC_Os03g51930Os.19523.1.S1_at11/113+29739046..29741681expressed protein
LOC_Os03g51940NANA3+29743049..29743348NA
LOC_Os03g51950Os.23313.1.S1_x_at11/113+29745306..29748361expressed protein
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19523.1.S1_at--728--7131Chr03:29739627..29739651 (25 bp)
GTCATAAGTTGGCTACTTGCCTGAA
LOC_Os03g51930
Os.19523.1.S1_at--473--251Chr03:29739601..29739625 (25 bp)
ATATCTTGGGAGTTTGCTTTCTGAA
LOC_Os03g51930
Os.19523.1.S1_at--659--7051Chr03:29739547..29739571 (25 bp)
GTAACATCATGGCTCCAAACTCATC
LOC_Os03g51930
Os.19523.1.S1_at--210--6451Chr03:29739413..29739437 (25 bp)
GATAAGGTTTCTTGGTTTCTGTCGA
LOC_Os03g51930
Os.19523.1.S1_at--650--1691Chr03:29739387..29739411 (25 bp)
AGCCATTTTTTCCTTGCATTCTTAC
LOC_Os03g51930
Os.19523.1.S1_at--950--1651Chr03:29739328..29739352 (25 bp)
AGCGCTAACTGCTTCTATTGTTTTG
LOC_Os03g51930
Os.19523.1.S1_at--14--8791Chr03:29739310..29739334 (25 bp)
TGTTTTGACAGTTGCTCACATCACT
LOC_Os03g51930
Os.19523.1.S1_at--551--6291Chr03:29739248..29739272 (25 bp)
GATGATTGCCATCCAACACTAGGTT
LOC_Os03g51930
Os.19523.1.S1_at--1052--1491Chr03:29739161..29739185 (25 bp)
AGCACATCCATAATCGCTTTCTGTA
LOC_Os03g51930
Os.19523.1.S1_at--457--9831Chr03:29739087..29739111 (25 bp)
TAAATCCATCACTGACATCTCTTTC
LOC_Os03g51930
Os.19523.1.S1_at--833--431Chr03:29739071..29739095 (25 bp)
ATCTCTTTCTTGTGTAGCATGGCCC
LOC_Os03g51930
Target Sequence 
GTCATAAGTTGGCTACTTGCCTGAATATATCTTGGGAGTTTGCTTTCTGAATATATCTCACTGTAACCAATTTGTAAGTT
GTAACATCATGGCTCCAAACTCATCATGCATGACTGGAGGAGCTCATTGAGGTAGCCAGAATTCGTAAGTTAATAAAATG
GTGAGAGCTGAACTGTTGCATTTTTTTTAAAAAAAAATCTGAAAGTGATCATGTGATAAGGTTTCTTGGTTTCTGTCGAA
AGCCATTTTTTCCTTGCATTCTTACTGATAATTGTTTACTCAAGAAACTGCTTGCAAGAAGCGCTAACTGCTTCTATTGT
TTTGACAGTTGCTCACATCACTGGTGCGAAGGTGGTGATATCTGATATTGTGTAAAGGTGATGATTGCCATCCAACACTA
GGTTCTAATTTCTATCGTGTAAGTACAATTTTGGAGGGAAGATGAGAAGGCTAGATCATAGTTGGAAGCACATCCATAAT
CGCTTTCTGTAACAAGATGGCACAAGGCTGTTACATATGTTAATCTTGAAGATGTACTACTAAATCCATCACTGACATCT
CTTTCTTGTGTAGCATGGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis