Browse Element(s) Details


Os.17136.1.S1_at

Description gb:AK108046.1
DB_XREF= gi:32993255
TID=Os.17136.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E10, full insert sequence.
FL= gb:AK108046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5192011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g51900Os.14204.1.S1_at11/113+29716693..29724741DEAD/DEAH box helicase family protein, expressed
LOC_Os03g51910Os.24540.1.A1_at11/113+29725371..29727471Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g51920Os.17136.1.S1_at11/113+29735174..29737573expressed protein
LOC_Os03g51930Os.19523.1.S1_at11/113+29739046..29741681expressed protein
LOC_Os03g51940NANA3+29743049..29743348NA
LOC_Os03g51950Os.23313.1.S1_x_at11/113+29745306..29748361expressed protein
LOC_Os03g51960Os.16838.1.S1_at11/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed
LOC_Os03g51960Os.23313.1.S1_x_at1/113+29749203..29751079UPF0308 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006508biological_processproteolysis
GO:0009416biological_processresponse to light stimulus
GO:0009723biological_processresponse to ethylene stimulus
GO:0009959biological_processnegative gravitropism
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0004222molecular_functionmetalloendopeptidase activity
GO:0017092molecular_functionsterol regulatory element-binding protein site 2 protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17136.1.S1_at--522--4011Chr03:29735729..29735753 (25 bp)
CGTCGCTGAACCTGCTGCCGTGCGG
LOC_Os03g51920
Os.17136.1.S1_at--897--3491Chr03:29735348..29735372 (25 bp)
CATGGCGGCGCGAGTAGGCTTTAGT
LOC_Os03g51920
Os.17136.1.S1_at--506--4111Chr03:29735320..29735344 (25 bp)
CGAACAAGTAGCTAGAGGGCGATTA
LOC_Os03g51920
Os.17136.1.S1_at--268--1091Chr03:29735305..29735329 (25 bp)
AGGGCGATTACTCTGTTTATGCTTC
LOC_Os03g51920
Os.17136.1.S1_at--195--151Chr03:29735299..29735323 (25 bp)
ATTACTCTGTTTATGCTTCGACGCG
LOC_Os03g51920
Os.17136.1.S1_at--861--4911Chr03:29735285..29735309 (25 bp)
GCTTCGACGCGTATGTGTATATAAC
LOC_Os03g51920
Os.17136.1.S1_at--802--3691Chr03:29735240..29735264 (25 bp)
CTAGTACTTACTAACCTCTACGAAT
LOC_Os03g51920
Os.17136.1.S1_at--709--2631Chr03:29735228..29735252 (25 bp)
AACCTCTACGAATTTTGCATTTGAA
LOC_Os03g51920
Os.17136.1.S1_at--746--6411Chr03:29735203..29735227 (25 bp)
GATCTTATATTGTTCTTTTCGGCTA
LOC_Os03g51920
Os.17136.1.S1_at--497--10571Chr03:29735191..29735215 (25 bp)
TTCTTTTCGGCTACTTTACTGAATT
LOC_Os03g51920
Os.17136.1.S1_at--179--3671Chr03:29735178..29735202 (25 bp)
CTTTACTGAATTATTATCGCTGATT
LOC_Os03g51920
Target Sequence 
CGTCGCTGAACCTGCTGCCGTGCGGGAGGCTGGAGGGCGGGCGGATCGCGCAGGCGCTGTTCGGGCGCGGCGCGGCGNNG
GTGCTGTCGTTCGCGACGTCGGTGGCGCTCGGCGCGGGCGCCATCATCGGCGGGAGCNGTGCTGTGCCTGGCGTGGGGGC
TGTTCGCGACGTTCGTCCGCGGCGGCGAGGAGATCCCGGCGCAGGACGAGATCACGCCGCTGGGGAGCGAGCGCTACGCG
TGGGGGCTCGTGCTCNCCGTCGTCTGCCTCCTCACGCTCTTCCCCAACGGCGGCGGCACCTACTCCNGCGACTTCCTCGG
CGCGCCATTCTTCCGCGGCGGCATCTAAGGCGCCCCTCGAGGCCTCGATCGATCTCTCCATCCATGGCGGCGCGAGTAGG
CTTTAGTGGGCGAACAAGTAGCTAGAGGGCGATTACTCTGTTTATGCTTCGACGCGTATGTGTATATAACAACATAAATN
ATACGTATTACTAGTACTTACTAACCTCTACGAATTTTGCATTTGAAGATCTTATATTGTTCTTTTCGGCTACTTTACTG
AATTATTATCGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis