Browse Element(s) Details


OsAffx.22205.1.S1_at

Description tigr:9629.m01592
TID=OsAffx.22205.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Breast carcinoma amplified sequence 2 (BCAS2)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1601010/11Breast carcinoma amplified sequence 2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22205.1.S1_at--1000--1031Chr01:9009896..9009920 (25 bp)
AGGTGCTCATGCTGGAGGCCCCGCC
LOC_Os01g16010
OsAffx.22205.1.S1_at--126--511NONE
ATCGGGTTCGAGAATCATCCTATGC
NONE
OsAffx.22205.1.S1_at--687--3611Chr01:9011361..9011385 (25 bp)
CTTGCTAAAGAGTACGAGCGTGTTA
LOC_Os01g16010
OsAffx.22205.1.S1_at--985--6771Chr01:9011382..9011406 (25 bp)
GTTAGAGCTGGGAAACCTCCTGCTA
LOC_Os01g16010
OsAffx.22205.1.S1_at--998--8151Chr01:9011392..9011416 (25 bp)
GGAAACCTCCTGCTACCATAGAGAT
LOC_Os01g16010
OsAffx.22205.1.S1_at--932--9031Chr01:9011402..9011426 (25 bp)
TGCTACCATAGAGATGTCCCGCTAT
LOC_Os01g16010
OsAffx.22205.1.S1_at--1119--751Chr01:9011415..9011439 (25 bp)
ATGTCCCGCTATGGTTTGGAGCCAC
LOC_Os01g16010
OsAffx.22205.1.S1_at--752--6671Chr01:9011463..9011487 (25 bp)
GTTGCTGCATGGAGGCAGGCTCTAA
LOC_Os01g16010
OsAffx.22205.1.S1_at--222--931Chr01:9011475..9011499 (25 bp)
AGGCAGGCTCTAAGAAATGCTCAGA
LOC_Os01g16010
OsAffx.22205.1.S1_at--438--831Chr01:9012208..9012228 (21 bp)
ATGGAATCAGTTTTGTCTAGGATGC
LOC_Os01g16010
OsAffx.22205.1.S1_at--402--9011Chr01:9012561..9012585 (25 bp)
TGCAAAAGATGGCTGTCGAATACAA
LOC_Os01g16010
Target Sequence 
AGGTGCTCATGCTGGAGGCCCCGCCGGCGCCCTCCGGGGCGCCGTGGCGCGCGCCGCCGGACGCGGAGGCCGTGGACGCG
CTGCCCTACATCGACGGCGACTACGGCGACCCGGCGGTGAAGCGGGAGGTGGACCGGATGGTGGAGGAGGAGATGCGGCG
CGGGAGCCGCAAGCCCGCCGACTTCCTCCGCGACCTCCCCCCCGTCCCCGCCATCGGGTTCGAGAATCATCCTATGCTTG
CTAAAGAGTACGAGCGTGTTAGAGCTGGGAAACCTCCTGCTACCATAGAGATGTCCCGCTATGGTTTGGAGCCACCCCCA
GCGAACAAGAGGAATGATGTTGCTGCATGGAGGCAGGCTCTAAGAAATGCTCAGAGCCAGCTGCACCATCAAATCATAAG
NNTNNANAATCTGGAGCTTATGCTGAAGTATGGTGTTGAGGTTTGGAAGCTTCAGAATAGACAAATGGAATCAGTTTTGT
CTAGGATGCAAAAGATGGCTGTCGAATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis