Browse Element(s) Details


Os.10951.1.S1_at

Description gb:AK121045.1
DB_XREF= gi:37990668
TID=Os.10951.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023053G08, full insert sequence.
FL= gb:AK121045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1604011/11Carrier protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein
LOC_Os01g16070NANA1+9050313..9050730hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10951.1.S1_at--556--2091Chr01:9022305..9022329 (25 bp)
ACATCTATTCTGTTGCTTTGCCGGA
LOC_Os01g16040
Os.10951.1.S1_at--16--871Chr01:9022224..9022248 (25 bp)
ATGGCTTTAGATAGCGTCAGCAGGA
LOC_Os01g16040
Os.10951.1.S1_at--94--8071Chr01:9022202..9022226 (25 bp)
GGAGCATTAACCCTACAAGATCTTA
LOC_Os01g16040
Os.10951.1.S1_at--287--1511Chr01:9022088..9022112 (25 bp)
AGCACCCTGGTGACTGAAATGGCAT
LOC_Os01g16040
Os.10951.1.S1_at--35--5591Chr01:9022073..9022097 (25 bp)
GAAATGGCATCTTCCCTATGCAGAT
LOC_Os01g16040
Os.10951.1.S1_at--622--651Chr01:9022056..9022080 (25 bp)
ATGCAGATTGGCCTGGTCGCTGATT
LOC_Os01g16040
Os.10951.1.S1_at--66--3911Chr01:9022044..9022068 (25 bp)
CTGGTCGCTGATTCTGATGCTGTGA
LOC_Os01g16040
Os.10951.1.S1_at--531--9131Chr01:9022027..9022051 (25 bp)
TGCTGTGAATCCCAGTCCGAAGACT
LOC_Os01g16040
Os.10951.1.S1_at--401--6571Chr01:9022001..9022025 (25 bp)
GATTCATGTTCTTCAGTTCGTCTCT
LOC_Os01g16040
Os.10951.1.S1_at--1012--6031Chr01:9021861..9021885 (25 bp)
GAGATCGTATGTATTTATTTTCCTA
LOC_Os01g16040
Os.10951.1.S1_at--1066--5471Chr01:9021801..9021825 (25 bp)
GAACTATTTTCTCATGTGTTTAGGT
LOC_Os01g16040
Target Sequence 
ACATCTATTCTGTTGCTTTGCCGGANTATTGAGGCGGNCGTTANAAGCAAACAAGNCANTAAATTCNTTTCTTTAGTGGC
AATATGGCTTTAGATAGCGTCAGCAGGAGCATTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATC
ATAAGTTCTTCAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATG
GCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTC
AGTTCGTCTCTTCGNCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTAC
AGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAG
GTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis