Browse Element(s) Details


OsAffx.22204.1.S1_at

Description tigr:9629.m01593
TID=OsAffx.22204.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=geranylgeranyl reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1602011/11Geranylgeranyl hydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class
LOC_Os01g16060OsAffx.11074.1.S1_s_at11/111+9038382..9042889expressed protein
LOC_Os01g16060Os.33034.2.S1_x_at10/111+9038382..9042889expressed protein
LOC_Os01g16060Os.22825.1.A1_at1/111+9038382..9042889expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0045550molecular_functiongeranylgeranyl reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22204.1.S1_at--229--2671Chr01:9015793..9015817 (25 bp)
AAGCCGGAGATCAAGAGGCTCCAGT
LOC_Os01g16020
OsAffx.22204.1.S1_at--806--1271Chr01:9015800..9015824 (25 bp)
AGATCAAGAGGCTCCAGTCGGGCAT
LOC_Os01g16020
OsAffx.22204.1.S1_at--338--2791Chr01:9015805..9015829 (25 bp)
AAGAGGCTCCAGTCGGGCATCCGCG
LOC_Os01g16020
OsAffx.22204.1.S1_at--178--4271Chr01:9015851..9015875 (25 bp)
CCGGCGGCCGCGTGGTCAGGGTGGA
LOC_Os01g16020
OsAffx.22204.1.S1_at--923--7711Chr01:9015870..9015894 (25 bp)
GGTGGAGGCGCACCCGATCCCGGAG
LOC_Os01g16020
OsAffx.22204.1.S1_at--184--5851Chr01:9016065..9016089 (25 bp)
GATACGGGCGGGATACCTCCGGCGG
LOC_Os01g16020
OsAffx.22204.1.S1_at--224--9031Chr01:9016133..9016157 (25 bp)
TGCAGCGGGTGTTCTACGGCGGGAA
LOC_Os01g16020
OsAffx.22204.1.S1_at--178--1871Chr01:9016193..9016217 (25 bp)
ACGAGCACGTGCAGCGCCGGACGTT
LOC_Os01g16020
OsAffx.22204.1.S1_at--534--9031Chr01:9016202..9016226 (25 bp)
TGCAGCGCCGGACGTTCGACAGCTA
LOC_Os01g16020
OsAffx.22204.1.S1_at--342--5771Chr01:9016212..9016236 (25 bp)
GACGTTCGACAGCTACCTGCACAAG
LOC_Os01g16020
OsAffx.22204.1.S1_at--311--9011Chr01:9016229..9016253 (25 bp)
TGCACAAGCGGATGGCGCCCGCCGA
LOC_Os01g16020
Target Sequence 
AAGCCGGAGATCAAGAGGCTCCAGTCGGGCATCCGCGCGCGCGCGGCGGGCAAGGTCGCCGGCGGCCGCGTGGTCAGGGT
GGAGGCGCACCCGATCCCGGAGCACCCGCGCCCCCGCCGCGTGGTGGGGCGCGTGGCGCTCGTCGGCGACGCGGCGGGCT
ACGTCACCCGGTGCTCCGGCGAGGGCATCTACTTCGCGGCCAGGTCGGGGCGCCTCTGCGGCCGCGCCATGGCCGACGAG
TGGCGGCTCACCGGCGCGGTGACGGAGGCCGGGATACGGGCGGGATACCTCCGGCGGTGGGACGACGAGTTCCGCCCCAC
GTTCCGGTTCCTGGACCTGCTGCAGCGGGTGTTCTACGGCGGGAACGCCGGGAGGGAGGCGCTGGTGGAGATGTGCGCCG
ACGAGCACGTGCAGCGCCGGACGTTCGACAGCTACCTGCACAAGCGGATGGCGCCCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis