Browse Element(s) Details


Os.96.1.S1_at

Description gb:AK071712.1
DB_XREF= gi:32981735
TID=Os.96.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.96 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110C13, full insert sequence.
FL= gb:AK071712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g160009/11SEC14 cytosolic factor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16020OsAffx.22204.1.S1_x_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16020OsAffx.22204.1.S1_at11/111+9015013..9016386Geranylgeranyl hydrogenase, putative, expressed
LOC_Os01g16030Os.35495.1.S1_s_at11/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16030Os.35495.1.S1_at10/111+9016651..9020854ADP-ribosylation factor, putative, expressed
LOC_Os01g16040Os.10951.1.S1_at11/111+9021750..9025676Carrier protein, putative, expressed
LOC_Os01g16050NANA1+9026233..9031175transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.96.1.S1_at--379--7771Chr01:9001922..9001946 (25 bp)
GGTGAAATTTGTGTACTCCAGCGAT
LOC_Os01g16000
Os.96.1.S1_at--119--6471Chr01:9001883..9001907 (25 bp)
GATAATGGCTGACGTCTTTGACTTG
LOC_Os01g16000
Os.96.1.S1_at--1000--8931Chr01:9001874..9001898 (25 bp)
TGACGTCTTTGACTTGGACAAGCTC
LOC_Os01g16000
Os.96.1.S1_at--1120--8131Chr01:9001859..9001883 (25 bp)
GGACAAGCTCGACTCAGCATTCGGA
LOC_Os01g16000
Os.96.1.S1_at--607--8211Chr01:9001830..9001854 (25 bp)
GGAATCCAGCTACCTTCGAATACAA
LOC_Os01g16000
Os.96.1.S1_at--952--2791Chr01:9001771..9001795 (25 bp)
AAGATGGGTTCTTCATTCAAATCAA
LOC_Os01g16000
Os.96.1.S1_at--354--3571Chr01:9001758..9001782 (25 bp)
CATTCAAATCAAACGGCATCACCCT
LOC_Os01g16000
Os.96.1.S1_at--177--2071Chr01:9001718..9001742 (25 bp)
ACATGTATCCGCTGACAAGGAGGCT
LOC_Os01g16000
Os.96.1.S1_at--954--2971Chr01:9001693..9001717 (25 bp)
AATGGTGGCGGTTCGGACGCCTCAA
LOC_Os01g16000
Os.96.1.S1_at--857--4191Chr01:9001366..9001390 (25 bp)
CCCTGTGGCATTCCTCCATAATAAA
NONE
Os.96.1.S1_at--907--771NONE
ATGTGCCGTGTACTTGTATGCGTCC
NONE
Target Sequence 
GGTGAAATTTGTGTACTCCAGCGATAAAGAGAGCCAGAAGATAATGGCTGACGTCTTTGACTTGGACAAGCTCGACTCAG
CATTCGGAGGAAGGAATCCAGCTACCTTCGAATACAATAGCTATGCTGAGCGTATGAGAGCCGATGACATTAAGATGGGT
TCTTCATTCAAATCAAACGGCATCACCCTGCCTCAGGACCATTCACATGTATCCGCTGACAAGGAGGCTAATGGTGGCGG
TTCGGACGCCTCAAGTGAGGCCTCCTTCTATAGTGGAACTGATTCCCCNNNTCNNGNNNAGNNNNGTNGNANNNNNNNNT
NNCTCCAGTCATGGGTTGGGAATATCGGATAGGTCAATATATACAGTTAGCTAACTAGGATGGAACGTTTGGACCATCGG
CTGTGATGCATTGACATCTTCCTGAAATATAAATGAGAAAATTCTGATGGATAAATTCGGTCGGGGCATTTCTTTGCTGC
TGGCCCGGCGGAAAAAAAATTCTGATGGATACCCTGTGGCATTCCTCCATAATAAATAATTTGATGTGCCGTGTACTTGT
ATGCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.96.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis