Browse Element(s) Details


Os.94.1.S1_at

Description gb:AK062518.1
DB_XREF= gi:32972536
TID=Os.94.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.94 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-C10, full insert sequence.
FL= gb:AK062518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1597911/11gb protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific
LOC_Os01g15950NANA1+8975807..8976082expressed protein
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed
LOC_Os01g15990OsAffx.22206.1.S1_at11/111+8992117..8993694expressed protein
LOC_Os01g15990OsAffx.27180.1.S1_x_at1/111+8992117..8993694expressed protein
LOC_Os01g16000Os.96.1.S1_at9/111+9001392..9004857SEC14 cytosolic factor family protein, putative, expressed
LOC_Os01g16010Os.9177.1.S1_at11/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed
LOC_Os01g16010OsAffx.22205.1.S1_at10/111+9009804..9013402Breast carcinoma amplified sequence 2 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.94.1.S1_at--469--4911Chr01:8986322..8986636 (25 bp)
GCTTCTCCATGATTGGTTCTGCTAT
LOC_Os01g15979
Os.94.1.S1_at--1092--2171Chr01:8987253..8987274 (22 bp)
ACACTATGCCTTTTGTTCGACGGTA
LOC_Os01g15979
Os.94.1.S1_at--888--10831Chr01:8988131..8988150 (20 bp)
TTGGTGCACCTCCAGTTATTGTCTT
LOC_Os01g15979
Os.94.1.S1_at--788--10231Chr01:8988142..8988166 (25 bp)
TATTGTCTTCTCTTCTGCATGTGCT
LOC_Os01g15979
Os.94.1.S1_at--852--1051Chr01:8988952..8988976 (25 bp)
AGGTGGGACAATACCAGCGCTTGCA
LOC_Os01g15979
Os.94.1.S1_at--348--1651Chr01:8988967..8988991 (25 bp)
AGCGCTTGCACAGCTGGTATCATCA
LOC_Os01g15979
Os.94.1.S1_at--756--4791Chr01:8989062..8989086 (25 bp)
GCTCCTCGACATTGTGATCTACAGT
LOC_Os01g15979
Os.94.1.S1_at--654--4871Chr01:8989244..8989268 (25 bp)
GCTATTTATCACCATGCACAGGCTG
LOC_Os01g15979
Os.94.1.S1_at--1059--7731Chr01:8989282..8989306 (25 bp)
GGTGTCGCAATAAGCCTGGAGTGTT
LOC_Os01g15979
Os.94.1.S1_at--1131--7391Chr01:8989314..8989338 (25 bp)
GTGATCTGCTTTAACCTTCAGGATG
LOC_Os01g15979
Os.94.1.S1_at--713--9631Chr01:8989331..8989355 (25 bp)
TCAGGATGCCATTTTCGTTTGCAAT
LOC_Os01g15979
Target Sequence 
GCTTCTCCATGATTGGTTCTGCTATTGGGGGTACAGCTGGAGCATTTTATGGTTTCAACCACACTATGCCTTTTGTTCGA
CGGTACATAAAAGGGCCAATGTGGATGCATTTTCTTGTTGGTGCACCTCCAGTTATTGTCTTCTCTTCTGCATGTGCTGG
GTTAGCAGGTGGGACAATACCAGCGCTTGCACAGCTGGTATCATCATCCTATCACTCAGCCACAGCGTCGTCCTTTGCCC
ACACAACTTCTCGTGATGAAATGCATAAGGCCAGAAGCTCCTCGACATTGTGATCTACAGTGGCAGCAAATTGTTAACTG
GAATCCTAACTATCCAAAACACCATATACTATTATAAATGTGCATGTGTTACCACATATCATCTGTTTTATGAGGAATGC
TCTTGTAAATGGTAAAACTTTCCCCTGTGGAATAGTGCTTATATATGTTCCCAATTTTGCTATTTATCACCATGCACAGG
CTGTTATTTTTGTTATGGTGTCGCAATAAGCCTGGAGTGTTGCGAATTGTGATCTGCTTTAACCTTCAGGATGCCATTTT
CGTTTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.94.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis