Browse Element(s) Details


OsAffx.11069.1.S1_x_at

Description gb:NM_187989.1
DB_XREF= gi:34903061
TID=OsAffx.11069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1591011/11UTP-glucose-1-phosphate uridylyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15920NANA1+8965529..8965735hypothetical protein
LOC_Os01g15934NANA1+8970406..8974984retrotransposon, putative, centromere-specific
LOC_Os01g15950NANA1+8975807..8976082expressed protein
LOC_Os01g15960OsAffx.23265.1.S1_at11/111+8980566..8980895hypothetical protein
LOC_Os01g15970Os.4750.1.S1_x_at11/111+8983055..8984199expressed protein
LOC_Os01g15970Os.55385.1.S1_at11/111+8983055..8984199expressed protein
LOC_Os01g15979Os.94.1.S1_at11/111+8985713..8989380gb protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005985biological_processsucrose metabolism
GO:0008152biological_processmetabolism
GO:0016036biological_processcellular response to phosphate starvation
GO:0003983molecular_functionUTP:glucose-1-phosphate uridylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11069.1.S1_x_at--191--5491Chr01:8961758..8961782 (25 bp)
GAACTTCAATATGCTCAACACTAAT
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--1007--2371Chr01:8961774..8961865 (25 bp)
AACACTAATAACCTGCGGGTGAACT
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--843--2951Chr01:8962177..8962201 (25 bp)
AAGGCCATTGGTGTTACTGTTCCTC
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--37--2271Chr01:8962224..8962248 (25 bp)
AAATACATCCGATCTGTTCCTCATC
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--915--6691Chr01:8962239..8962342 (25 bp)
GTTCCTCATCCTGTCTGATTTATAT
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--563--6231Chr01:8962348..8962372 (25 bp)
GATGGATGGCACTGTAACCCGTAAC
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--801--2611Chr01:8962394..8962418 (25 bp)
AACCCCTTGATTGATCTTGGACCTG
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--65--6651Chr01:8962567..8962591 (25 bp)
GTTGACAGTTTCCTTGACCGATTTA
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--246--3051Chr01:8962596..8962620 (25 bp)
AATCCCTAGTATTGTTGCGCTTGAT
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--445--8891Chr01:8962949..8962973 (25 bp)
TGAGGTGACGATTGCTGCCCAGTTA
LOC_Os01g15910
OsAffx.11069.1.S1_x_at--151--3211Chr01:8963015..8963039 (25 bp)
CAAGGTAAAAGTTCATCTCTGGATA
LOC_Os01g15910
Target Sequence 
GAACTTCAATATGCTCAACACTAATAACCTGCGGGTGAACTTGAAGGCCATCAAGAGGCTGGTAAAAGCTGAAGCACTAA
AGATGGAAATCATTCCAAACCTAAAGGAAGTTGATGGTGTGAAAGTCTTGCAACTTGAAAAGGAAGCTGGTTCAGCAATA
CAGTGCTTTGAAAAGGCCATTGGTGTTACTGTTCCTCGCTCAAGGTTCCTTGCAGTAAAAAATACATCCGATCTGTTCCT
CATCCTGTCTGATTTATATATTGTGATGGATGGCACTGTAACCCGTAACCCAGCTAGAGATAATTCAACAAACCCCTTGA
TTGATCTTGGACCTGAGTTCAGAAAGGTTGACAGTTTCCTTGACCGATTTAAATCAATCCCTAGTATTGTTGCGCTTGAT
AGCTTGAAAATCTCTGGGGATGTTTGGTTCGGTTCAAGAATTACTCTCAAGGGTGAGGTGACGATTGCTGCCCAGTTAGG
GTTAAAGCTGGATATTCTTGATGGCAGTGTTTTTGATAACAAGGTAAAAGTTCATCTCTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11069.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis