Browse Element(s) Details


Os.10271.1.S1_x_at

Description gb:AK101040.1
DB_XREF= gi:32986249
TID=Os.10271.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000O03, full insert sequence.
FL= gb:AK101040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g158601/11PRP1 splicing factor, N-terminal family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10271.1.S1_x_at--1076--8471Chr01:8933297..8933321 (25 bp)
TGGCGTCGGCAGAAGAGCTTTGTTC
LOC_Os01g15860
Os.10271.1.S1_x_at--1014--4871NONE
GCTTTGTTCTACATGTAAGAGCCTA
NONE
Os.10271.1.S1_x_at--61--5871Chr01:8945135..8945159 (25 bp)
GAGCCTACGTTCGAAGGACCTTCAG
NONE
Os.10271.1.S1_x_at--773--8091Chr01:8945150..8945174 (25 bp)
GGACCTTCAGCTTCATGTTATTACC
NONE
Os.10271.1.S1_x_at--505--6291Chr01:8945183..8945207 (25 bp)
GATGATTGACGCTTTGCTCAAAGGA
NONE
Os.10271.1.S1_x_at--912--10371Chr01:8945277..8945301 (25 bp)
TTTTCATTGGAGCTTCTACTGCTTC
NONE
Os.10271.1.S1_x_at--524--771Chr01:8945341..8945365 (25 bp)
ATGTGCAGTCCCTCCCTGAGAAATA
NONE
Os.10271.1.S1_x_at--137--1791Chr01:8945365..8945389 (25 bp)
ACCGTTTTCAAGTATCACATGCAGT
NONE
Os.10271.1.S1_x_at--646--9791Chr01:8945419..8945443 (25 bp)
TAAGACCAAATTGCTACTTCCTCCG
NONE
Os.10271.1.S1_x_at--426--6871Chr01:8945466..8945490 (25 bp)
GTATTGCCCACATTTCTTTGTAGGA
NONE
Os.10271.1.S1_x_at--76--8131Chr01:8945488..8945512 (25 bp)
GGACTCATCTGAATCCTTAGTTTTT
NONE
Target Sequence 
TGGCGTCGGCAGAAGAGCTTTGTTCTACATGTAAGAGCCTACGTTCGAAGGACCTTCAGCTTCATGTTATTACCTCCAAT
ATGATGATTGACGCTTTGCTCAAAGGAGGCAGATAGGAATATGCCATGGATATGTTTAGTCCAGAATAATGTGGTCTACA
ATTTATTTAATGATTATTTTCATTGGAGCTTCTACTGCTTCCCAGCTACCTCTTTTTCTCAAAGAGGAAATATATGCAGC
ATGTGCAGTCCCTCCCTGAGAAATACCGTTTTCAAGTATCACATGCAGTATTTGATAATCGAAATTCTGGTCTGACAATA
AGACCAAATTGCTACTTCCTCCGTTTCATATTATAAGACTTTCTAGTATTGCCCACATTTCTTTGTAGGACTCATCTGAA
TCCTTAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10271.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis