Browse Element(s) Details


OsAffx.11067.1.S1_at

Description tigr:9629.m01575
TID=OsAffx.11067.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1584011/11cytochrome P450 71B10, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11067.1.S1_at--89--831Chr01:8918967..8918991 (25 bp)
ATGGTTCCAGATTTTGTTGGCTTCA
LOC_Os01g15840
OsAffx.11067.1.S1_at--697--5871Chr01:8918941..8918965 (25 bp)
GAGCCTGGTCAAAGGACTCTATGCA
LOC_Os01g15840
OsAffx.11067.1.S1_at--44--5051Chr01:8918820..8918844 (25 bp)
GCAGAATCTTTTGTTGGCCTTCTAT
LOC_Os01g15840
OsAffx.11067.1.S1_at--352--4451Chr01:8918804..8918828 (25 bp)
GCCTTCTATTTTCTGCCTGTGAGCA
LOC_Os01g15840
OsAffx.11067.1.S1_at--1013--8991Chr01:8918746..8918770 (25 bp)
TGAAGTGGCGCTCATGTCTGTATCC
LOC_Os01g15840
OsAffx.11067.1.S1_at--896--8751Chr01:8918703..8918727 (25 bp)
TGTAGCACGCTTAGTCACCTGAAGA
LOC_Os01g15840
OsAffx.11067.1.S1_at--628--5631Chr01:8918671..8918695 (25 bp)
GACACCTGTGGCTTATGATCGTAAT
LOC_Os01g15840
OsAffx.11067.1.S1_at--721--7751Chr01:8918607..8918631 (25 bp)
GGTGTTTCTAGCAACTGTCTTCATG
LOC_Os01g15840
OsAffx.11067.1.S1_at--941--5291Chr01:8918574..8918598 (25 bp)
GAAGGCACAGTTCAACCCACAATAG
LOC_Os01g15840
OsAffx.11067.1.S1_at--671--5211Chr01:8918485..8918509 (25 bp)
GAATTCTTTCCATGATGACTTTGAC
LOC_Os01g15840
OsAffx.11067.1.S1_at--783--151Chr01:8918456..8918480 (25 bp)
ATTATCCAGCAATCGCTTCACTTTG
LOC_Os01g15840
Target Sequence 
ATGGTTCCAGATTTTGTTGGCTTCATGAGCCTGGTCAAAGGACTCTATGCAAAAGGAAGAATGGAAGAATCTAGGAGCAT
CTTGAGAGAGATGTTTCAGTGCAAAGAAGTTGCAGAGTTCATAAACAGTGTTGGGGATAAGATCCAAGCAGAATCTTTTG
TTGGCCTTCTATTTTCTGCCTGTGAGCAAGGGAGGATTGATGAGGTCGTGACTATCCTAAATGAAGTGGCGCTCATGTCT
GTATCCTCTTCAGATTCTAATAATTGTAGCACGCTTAGTCACCTGAAGAACGTAGAGACACCTGTGGCTTATGATCGTAA
TATGGATAATCCTGGACAAGTTTTATGTTCAACTACTTATGGTGTTTCTAGCAACTGTCTTCATGGAATTTCTGAAGGCA
CAGTTCAACCCACAATAGATGGAGCTGAGAATTTATGCACACCAAGTGATGATACTGATATTTACTATGATAATTTGCTA
CGGAATTCTTTCCATGATGACTTTGACACATATTATCCAGCAATCGCTTCACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis