Browse Element(s) Details


Os.10270.1.S1_at

Description gb:AU081576
DB_XREF= gi:6449634
DB_XREF=AU081576
CLONE=R0541_12Z
TID=Os.10270.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1581011/11Peroxidase 9 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15770Os.34400.1.S1_at10/111+8880280..8882190expressed protein
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10270.1.S1_at--430--8551Chr01:8900638..8900662 (25 bp)
TGGAGTTTGCTACCCCTTCGAAATT
LOC_Os01g15810
Os.10270.1.S1_at--17--5631Chr01:8900612..8900636 (25 bp)
GACAACACCTATTACAAGCTGCTGA
LOC_Os01g15810
Os.10270.1.S1_at--575--1331Chr01:8900579..8900603 (25 bp)
AGAGGGCTCCTCAATTCAGATGAAG
LOC_Os01g15810
Os.10270.1.S1_at--507--10611Chr01:8900554..8900578 (25 bp)
TTCTGTGGACAGGACGAGACCCGCA
LOC_Os01g15810
Os.10270.1.S1_at--503--1291Chr01:8900530..8900554 (25 bp)
AGATCGCGGGTCTCGTCAGAAGCTA
LOC_Os01g15810
Os.10270.1.S1_at--1010--3011Chr01:8900441..8900465 (25 bp)
AATCCCCTCACTGGTTACGACGGAG
LOC_Os01g15810
Os.10270.1.S1_at--823--3031Chr01:8900415..8900439 (25 bp)
AATCCGCAAGAACTGCCGTGTGGTT
LOC_Os01g15810
Os.10270.1.S1_at--729--10191Chr01:8900341..8900365 (25 bp)
TATATTTCCTTTGCTTTTGGTCACC
LOC_Os01g15810
Os.10270.1.S1_at--700--10291Chr01:8900297..8900321 (25 bp)
TTTCCAGTTTGGATGTCACCACGCA
LOC_Os01g15810
Os.10270.1.S1_at--683--551Chr01:8900208..8900232 (25 bp)
ATCCTGTTTCTTTTTTGTACTCAAT
LOC_Os01g15810
Os.10270.1.S1_at--1058--2971Chr01:8900186..8900210 (25 bp)
AATGTAATTCCAGTCCTTTCGATGA
LOC_Os01g15810
Target Sequence 
TGGAGTTTGCTACCCCTTCGAAATTCGACAACACCTATTACAAGCTGCTGATCGAGGGAAGAGGGCTCCTCAATTCAGAT
GAAGTTCTGTGGACAGGACGAGACCCGCAGATCGCGGGTCTCGTCAGAAGCTATGCAGAAAACGAACCGCTGTNCTTCGA
GCACTACGTGAACTCGATAACCAAGATGGGGAACATCAATCCCCTCACTGGTTACGACGGAGAAATCCGCAAGAACTGCC
GTGTGGTTAACAAGAAGATCTAGCATATGAAAGCGGGTTCGGTTTAATTTGCATCAATATATTTCCTTTGCTTTTGGTCA
CCGTTGTAATTTAGAGATTGTTTTCCAGTTTGGATGTCACCACGCAAGTGTGGTGGCATGAGGTGTAATTGCAGTCTGCA
AGCCCTGTCTGCTTTTCTTTTTCAAAATTAATCCTGTTTCTTTTTTGTACTCAATGTAATTCCAGTCCTTTCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis