Browse Element(s) Details


Os.34400.1.S1_at

Description gb:AK071545.1
DB_XREF= gi:32981568
TID=Os.34400.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099M14, full insert sequence.
FL= gb:AK071545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1577010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15750NANA1+8861073..8864363retrotransposon protein, putative, unclassified
LOC_Os01g15760NANA1+8864992..8871146retrotransposon protein, putative, unclassified
LOC_Os01g15770Os.34400.1.S1_at10/111+8880280..8882190expressed protein
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34400.1.S1_at--910--8451Chr01:8880842..8880866 (25 bp)
TGGCCAGCCTGTTCGTCACGGAGAT
LOC_Os01g15770
Os.34400.1.S1_at--463--6051Chr01:8880892..8880916 (25 bp)
GAGATTCTCAAGGAGTTCGGCATCA
LOC_Os01g15770
Os.34400.1.S1_at--414--1751NONE
ACCTCCTCGTCGATATTTTATTCGC
NONE
Os.34400.1.S1_at--797--91Chr01:8881596..8881620 (25 bp)
ATTCGCCGTGATATTCTCGGTGGCA
LOC_Os01g15770
Os.34400.1.S1_at--153--6791Chr01:8881628..8881652 (25 bp)
GTTTTGGGCCATACCTCACGTACGT
LOC_Os01g15770
Os.34400.1.S1_at--800--6991Chr01:8881647..8881671 (25 bp)
GTACGTCACCGTTACGGCAGACAAC
LOC_Os01g15770
Os.34400.1.S1_at--954--4911Chr01:8881891..8881915 (25 bp)
GCTTGCAGCTGGTGAGTGCCTACTG
LOC_Os01g15770
Os.34400.1.S1_at--520--4451Chr01:8881908..8881932 (25 bp)
GCCTACTGGTTCCTGAGGATCCTAA
LOC_Os01g15770
Os.34400.1.S1_at--919--3051Chr01:8881997..8882021 (25 bp)
AATCTTGTTTGGGATCGAGCCGTGC
LOC_Os01g15770
Os.34400.1.S1_at--855--9371Chr01:8882011..8882035 (25 bp)
TCGAGCCGTGCTTGTAACATAGTAT
LOC_Os01g15770
Os.34400.1.S1_at--504--6811Chr01:8882110..8882134 (25 bp)
GTTTTACCATATAATTGCCCACTGA
LOC_Os01g15770
Target Sequence 
TGGCCAGCCTGTTCGTCACGGAGATCTCCAGCCCGCTGCTGCATCTCCGCGAGATTCTCAAGGAGTTCGGCATCAAGGAC
ACCGACCTCAACCTCCTCGTCGATATTTTATTCGCCGTGATATTCTCGGTGGCACGAATGNGTTTTGGGCCATACCTCAC
GTACGTCACCGTTACGGCAGACAACCCCATCCTCATTAAGGCGATGGCGACNGGCTTGCAGCTGGTGAGTGCCTACTGGT
TCCTGAGGATCCTAAGGATGGTCAGGCACAAGCTGGGGAAGAAAAGACCAGCGCCGAAAGTTGCCGGCGATTGATGCAAA
ATCTTGTTTGGGATCGAGCCGTGCTTGTAACATAGTATTGTTTCATGGCAAGAAATCAAGAATGTCTCAAACAATGGATA
TGATGATTTGTACTACTCTAGTAATTTAATTAGTTTTACCATATAATTGCCCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis