Browse Element(s) Details


Os.27791.1.S1_at

Description gb:NM_187974.1
DB_XREF= gi:34903031
TID=Os.27791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1578010/11glycosyl transferase family 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15750NANA1+8861073..8864363retrotransposon protein, putative, unclassified
LOC_Os01g15760NANA1+8864992..8871146retrotransposon protein, putative, unclassified
LOC_Os01g15770Os.34400.1.S1_at10/111+8880280..8882190expressed protein
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27791.1.S1_at--508--2951Chr01:8885235..8885259 (25 bp)
AATGGGATTCAGGACCGGGTTCACT
LOC_Os01g15780
Os.27791.1.S1_at--812--2451Chr01:8885205..8885229 (25 bp)
AACAAGACATTAGCAGTGGCTCCTT
LOC_Os01g15780
Os.27791.1.S1_at--446--8491Chr01:8885189..8885213 (25 bp)
TGGCTCCTTATTTGGCTGCAACTGA
LOC_Os01g15780
Os.27791.1.S1_at--11--6271Chr01:8885166..8885190 (25 bp)
GATGTGCTTGTTCAGAACTCTCAGG
LOC_Os01g15780
Os.27791.1.S1_at--439--2011NONE
ACTCTCAGGCCCGTGGAGAATGCTT
NONE
Os.27791.1.S1_at--272--4571Chr01:8882714..8882738 (25 bp)
GCGCCCCTCGCGAAGAACATGGTAA
LOC_Os01g15780
Os.27791.1.S1_at--198--4411Chr01:8882680..8882704 (25 bp)
GCCACGAAGAGGACAGGGTCTCCAT
LOC_Os01g15780
Os.27791.1.S1_at--299--871Chr01:8882527..8882630 (25 bp)
ATGGCTGCGTCCAAAATGGCATTCT
LOC_Os01g15780
Os.27791.1.S1_at--516--8291Chr01:8882510..8882534 (25 bp)
GGCATTCTCAGTTTTCTGTGCTAAC
LOC_Os01g15780
Os.27791.1.S1_at--441--9911Chr01:8882462..8882486 (25 bp)
TACCAAGTTTGGACTCGAGTTTGAT
LOC_Os01g15780
Os.27791.1.S1_at--50--6871Chr01:8882444..8882468 (25 bp)
GTTTGATTGTAACTTGCTGTCTGTT
LOC_Os01g15780
Target Sequence 
AATGGGATTCAGGACCGGGTTCACTTTGTAAACAAGACATTAGCAGTGGCTCCTTATTTGGCTGCAACTGATGTGCTTGT
TCAGAACTCTCAGGCCCGTGGAGAATGCTTTGGAAGGATAACGATTGAAGCAATGGCATTCAAGTTGCCAGTGTTGGGCA
CGGCGGCCGGAGGGACCACGGAGATCGTCGTGGACGGCTCAACCGGCCTCCTGCACCCCGCCGGGAAGGAAGGCGTCGCG
CCCCTCGCGAAGAACATGGTAAGGCTCGCGAGCCACGAAGAGGACAGGGTCTCCATGGGTAGGAAAGGCTATGGCAGGGT
GAAGGAAATGTTCATGGAGCACCACATGGCTGCGTCCAAAATGGCATTCTCAGTTTTCTGTGCTAACATGGAGTATGTAG
ATCCAGATTTTACCAAGTTTGGACTCGAGTTTGATTGTAACTTGCTGTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis