Browse Element(s) Details


Os.45994.1.S1_at

Description gb:AK119928.1
DB_XREF= gi:37989551
TID=Os.45994.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A02, full insert sequence.
FL= gb:AK119928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1579011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15760NANA1+8864992..8871146retrotransposon protein, putative, unclassified
LOC_Os01g15770Os.34400.1.S1_at10/111+8880280..8882190expressed protein
LOC_Os01g15780Os.27791.1.S1_at10/111+8882308..8888246glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45994.1.S1_at--765--4371Chr01:8895304..8895328 (25 bp)
CCAAAGAATGTGGTTGGTTCGACCA
LOC_Os01g15790
Os.45994.1.S1_at--809--6611Chr01:8895316..8895340 (25 bp)
GTTGGTTCGACCACATAATTGTCAG
LOC_Os01g15790
Os.45994.1.S1_at--924--5851Chr01:8895324..8895348 (25 bp)
GACCACATAATTGTCAGTTCTACAT
LOC_Os01g15790
Os.45994.1.S1_at--544--7111Chr01:8895336..8895360 (25 bp)
GTCAGTTCTACATAAGTGCATATTG
LOC_Os01g15790
Os.45994.1.S1_at--552--7331Chr01:8895351..8895375 (25 bp)
GTGCATATTGACTTCTAGTCGCATT
LOC_Os01g15790
Os.45994.1.S1_at--564--5691Chr01:8895360..8895384 (25 bp)
GACTTCTAGTCGCATTTAGACACAT
LOC_Os01g15790
Os.45994.1.S1_at--178--1151Chr01:8895367..8895391 (25 bp)
AGTCGCATTTAGACACATTTCAATT
LOC_Os01g15790
Os.45994.1.S1_at--684--4951Chr01:8895371..8895395 (25 bp)
GCATTTAGACACATTTCAATTGAGA
LOC_Os01g15790
Os.45994.1.S1_at--683--9471Chr01:8895400..8895424 (25 bp)
TTCGTACGTTAGAAATCCGATGGGT
LOC_Os01g15790
Os.45994.1.S1_at--306--9291Chr01:8895415..8895439 (25 bp)
TCCGATGGGTTTAGTTTTCAATAAT
LOC_Os01g15790
Os.45994.1.S1_at--75--6831Chr01:8895423..8895447 (25 bp)
GTTTAGTTTTCAATAATATGGGACA
LOC_Os01g15790
Target Sequence 
CCAAAGAATGTGGTTGGTTCGACCACATAATTGTCAGTTCTACATAAGTGCATATTGACTTCTAGTCGCATTTAGACACA
TTTCAATTGAGAAAATTTCGTACGTTAGAAATCCGATGGGTTTAGTTTTCAATAATATGGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45994.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis