Browse Element(s) Details


Os.1153.1.S1_at

Description gb:AK102117.1
DB_XREF= gi:32987326
TID=Os.1153.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.1153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084K24, full insert sequence.
FL= gb:AK061583.1 gb:AK102117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1583011/11Peroxidase 72 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15790Os.45994.2.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.45994.1.S1_x_at11/111+8889381..8896918expressed protein
LOC_Os01g15790Os.10459.1.S1_at9/111+8889381..8896918expressed protein
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1153.1.S1_at--1110--9631Chr01:8916172..8916195 (24 bp)
TCAGGTGGCCACACCATTGGCATGT
LOC_Os01g15830
Os.1153.1.S1_at--1035--11Chr01:8916186..8916210 (25 bp)
ATTGGCATGTCTCGGTGCACCAGCT
LOC_Os01g15830
Os.1153.1.S1_at--220--5191Chr01:8916238..8916262 (25 bp)
GCAATGGCATGGCTGACTACACACT
LOC_Os01g15830
Os.1153.1.S1_at--1036--8551Chr01:8916262..8916286 (25 bp)
TGGATGTGTCCTACGCGGCACAGCT
LOC_Os01g15830
Os.1153.1.S1_at--938--10751Chr01:8916340..8916364 (25 bp)
TTGTCAGCCCCGCAAAGTTCGACAA
LOC_Os01g15830
Os.1153.1.S1_at--161--2051Chr01:8916370..8916394 (25 bp)
ACTTCAAGAACATCCTGTCTGGCAA
LOC_Os01g15830
Os.1153.1.S1_at--987--2871Chr01:8916393..8916417 (25 bp)
AAGGGCCTTCTCAGCTCTGATCAGG
LOC_Os01g15830
Os.1153.1.S1_at--75--8831Chr01:8916410..8916434 (25 bp)
TGATCAGGTCCTGCTTACCAAGAGC
LOC_Os01g15830
Os.1153.1.S1_at--396--711Chr01:8916469..8916493 (25 bp)
ATGATGTCAACCTCTTCTTCAAGCA
LOC_Os01g15830
Os.1153.1.S1_at--471--5011Chr01:8916568..8916592 (25 bp)
GCAGGAGGCTCAACAACTACTACCA
LOC_Os01g15830
Os.1153.1.S1_at--291--7911Chr01:8916597..8916621 (25 bp)
GGTTGTCTTGTGTGCTGAGTTTTAC
LOC_Os01g15830
Target Sequence 
TCAGGTGGCCACACCATTGGCATGTCTCGGTGCACCAGCTTCCGTCAGAGGCTCTACAATCAGAGCGGCAATGGCATGGC
TGACTACACACTGGATGTGTCCTACGCGGCACAGCTGAGGCAGGGATGCCCCCGTTCTGGTGGTGACAACAACCTCTTCC
CGCTAGACTTTGTCAGCCCCGCAAAGTTCGACAACTTCTACTTCAAGAACATCCTGTCTGGCAAGGGCCTTCTCAGCTCT
GATCAGGTCCTGCTTACCAAGAGCGCTGAAACAGCGGCGCTCGTGAAGGCGTATGCTGATGATGTCAACCTCTTCTTCAA
GCACTTCGCACAGTCAATGGTGAATATGGGCAACATCTCGCCTCTGACTGGATCACAGGGGGAGATCAGGAAGAACTGCA
GGAGGCTCAACAACTACTACCACTGAGGTTGTCTTGTGTGCTGAGTTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis