Browse Element(s) Details


OsAffx.23264.1.S1_s_at

Description gb:NM_187982.1
DB_XREF= gi:34903047
TID=OsAffx.23264.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1585011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15800OsAffx.2016.1.S1_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15800OsAffx.2016.1.S1_x_at11/111+8897748..8898747hypothetical protein
LOC_Os01g15810Os.10270.1.S1_at11/111+8900136..8902218Peroxidase 9 precursor, putative, expressed
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23264.1.S1_s_at--754--2431Chr01:8925130..8925154 (25 bp)
AAAATATTCACATACCGGCGTCTGG
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--41--1611Chr01:8925168..8925192 (25 bp)
AGCTGCATCATTAGCAACCCTTATG
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--701--3971Chr01:8925248..8925272 (25 bp)
CGGGATCTGGTGATACAACTCCAAT
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--70--6071Chr01:8925292..8925316 (25 bp)
GAGTTGCTAGCTCCTTCTATATTTA
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--914--5911Chr01:8925317..8925341 (25 bp)
GAGCTATAGTATCACTGCATCCTGC
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--1135--6411Chr01:8925344..8925368 (25 bp)
GATCTACTGATCCTGATGCTGTGGC
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--1066--9832Chr10:10785554..10785574 (21 bp)
TAAATCACTTTCTCTGTTGCTGCGT
NONE
OsAffx.23264.1.S1_s_at--469--7931Chr01:8925873..8925897 (25 bp)
GGATTGCCAGCTATCAGACTCTATT
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--199--4691Chr01:8926018..8926042 (25 bp)
GCGGACGGCTTCTGCTGATGGACAA
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--1134--6231Chr01:8926034..8926058 (25 bp)
GATGGACAAGTCTTTGGCTCTGCTT
LOC_Os01g15850
OsAffx.23264.1.S1_s_at--436--7411Chr01:8926099..8926123 (25 bp)
GTGTTGGTTCAGATCCTCAGGATGC
LOC_Os01g15850
Target Sequence 
AAAATATTCACATACCGGCGTCTGGATTGGTCAAAAAGAGCTGCATCATTAGCAACCCTTATGAATGATGACTTTGTGGA
TCCATCTAAGGAGCTGAACCTGCAAAACATGAGCAAATCGGGATCTGGTGATACAACTCCAATAGATCAGGTTGCGATAA
TTGAGTTGCTAGCTCCTTCTATATTTAGAGCTATAGTATCACTGCATCCTGCAGGATCTACTGATCCTGATGCTGTGGCT
TTCTTCTCTCCTACTGAGGAGCATGCAGATAAAGCATTGCAATACTTTGTCAGTGTGGAACCAACTAAATCACTTTCTCT
GTTGCTGCGTTGGATTGCCAGCTATCAGACTCTATTTACAAAAGTTTGCAGTAAATGCGGACGGCTTCTGCTGATGGACA
AGTCTTTGGCTCTGCTTTTACCCCCTGTCCAGCGCCCATACCATCATCAGACTTCTAGTGTTGGTTCAGATCCTCAGGAT
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23264.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis