Browse Element(s) Details


Os.54158.1.S1_at

Description gb:AK102230.1
DB_XREF= gi:32987439
TID=Os.54158.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088A04, full insert sequence.
FL= gb:AK102230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5064011/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g158501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50600Os.27648.1.S1_at11/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50600Os.45963.1.S1_x_at1/115+28920855..28922556Serine carboxypeptidase family protein, expressed
LOC_Os05g50610Os.29987.2.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.29987.1.S1_at11/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.43567.1.S1_x_at5/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.53217.1.S1_x_at4/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50610Os.38172.1.S1_x_at2/115+28925864..28929828retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640Os.54158.1.S1_at11/115+28945595..28949500hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54158.1.S1_at--949--10511Chr05:28948910..28948934 (25 bp)
TTCAGAAATTGCGACGAGCCAGCCC
LOC_Os05g50640
Os.54158.1.S1_at--104--5871Chr05:28948925..28948949 (25 bp)
GAGCCAGCCCTCAATATCTGAGCTG
LOC_Os05g50640
Os.54158.1.S1_at--373--9171Chr05:28948975..28948999 (25 bp)
TGCCCCGCATCCAAGACTTTGAAAT
LOC_Os05g50640
Os.54158.1.S1_at--796--2471Chr05:28949036..28949060 (25 bp)
AACACTCTCCAAGATGGCTCGTGAT
LOC_Os05g50640
Os.54158.1.S1_at--739--6951Chr05:28949095..28949119 (25 bp)
GTAGCTCTATATTTTCGGCGACGGC
LOC_Os05g50640
Os.54158.1.S1_at--184--9871Chr05:28949145..28949169 (25 bp)
TACAGAAGCTCCCTGCGTCCTGAAA
LOC_Os05g50640
Os.54158.1.S1_at--322--911Chr05:28949176..28949200 (25 bp)
AGGCTCTTTTCTGTGCGAAGGACTG
LOC_Os05g50640
Os.54158.1.S1_at--304--5411Chr05:28949226..28949250 (25 bp)
GAAGCTCCAAGCACAGCGTTGGTGA
LOC_Os05g50640
Os.54158.1.S1_at--1140--8671Chr05:28949357..28949381 (25 bp)
TGTGACTCAGATTCCGTTCTAGCTA
LOC_Os05g50640
Os.54158.1.S1_at--308--4191Chr05:28949383..28949407 (25 bp)
CCCTCAGATTACTTTGCACCATATG
LOC_Os05g50640
Os.54158.1.S1_at--259--2912Chr05:28949458..28949482 (25 bp)
AAGGATATTAGGAGCCATCTTCAAT
LOC_Os05g50640
Target Sequence 
TTCAGAAATTGCGACGAGCCAGCCCTCAATATCTGAGCTGGAGCAATACCTGGAAGAAGCCCTCATGCCCCGCATCCAAG
ACTTTGAAATTTTGGAGTGGTGGAAGCTTAACACCATTAAGTTCCCAACACTCTCCAAGATGGCTCGTGATGTATTGGCC
ATCCCCATGTCCATGGTGAGCAGTGGTAGCTCTATATTTTCGGCGACGGCAACGGGAAGCCAGATGCTTGATGACTACAG
AAGCTCCCTGCGTCCTGAAACTGTGGAGGCTCTTTTCTGTGCGAAGGACTGGCTGCAGTACCCACCGGCTACCACTGAAG
CTCCAAGCACAGCGTTGGTGAAGATGGAGAACTAAGTTATAACTTAGTATTAGTTAAATATTTGCATTTAGGTGGTGTTT
AATTTGCATGTGGTTTTTTGGCTGTGTGAGTGGTTTAGAACATAGAATGTGACTCAGATTCCGTTCTAGCTACCCCTCAG
ATTACTTTGCACCATATGTTATATTACTAGATAATCTTAAGCCATGTGACTGAGAGTTCGAAGTTATAAAGGATATTAGG
AGCCATCTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis