Browse Element(s) Details


Os.22458.1.S1_s_at

Description gb:D43360
DB_XREF= gi:3107620
DB_XREF=D43360
CLONE=SS299
TID=Os.22458.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22458 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5066011/11PX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50624Os.51355.1.S1_at11/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50624Os.7726.1.S1_at9/115+28938490..28940826hAT family dimerisation domain containing protein, expressed
LOC_Os05g50640Os.54158.1.S1_at11/115+28945595..28949500hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22458.1.S1_s_at--463--9451Chr05:28958687..28958711 (25 bp)
TCTGGCAAGAGGTGGAGAGATCATC
LOC_Os05g50660
Os.22458.1.S1_s_at--69--251Chr05:28958735..28958759 (25 bp)
ATATACTGAATACATCGGCAGATGA
LOC_Os05g50660
Os.22458.1.S1_s_at--539--491Chr05:28958748..28958772 (25 bp)
ATCGGCAGATGATTCAAGGACGGAT
LOC_Os05g50660
Os.22458.1.S1_s_at--582--8111Chr05:28958765..28958789 (25 bp)
GGACGGATGGACTGTATGATGATAC
LOC_Os05g50660
Os.22458.1.S1_s_at--238--7091Chr05:28958805..28958829 (25 bp)
GTCAAGGATGTTTAGTGGTGCGAAT
LOC_Os05g50660
Os.22458.1.S1_s_at--324--8611Chr05:28958820..28958844 (25 bp)
TGGTGCGAATGCTTCATCTTTGTCA
LOC_Os05g50660
Os.22458.1.S1_s_at--633--4591Chr05:28958824..28958848 (25 bp)
GCGAATGCTTCATCTTTGTCATTGG
LOC_Os05g50660
Os.22458.1.S1_s_at--760--9591Chr05:28958842..28958866 (25 bp)
TCATTGGCATCAACTGACTCTTCAT
LOC_Os05g50660
Os.22458.1.S1_s_at--673--9711Chr05:28958851..28958875 (25 bp)
TCAACTGACTCTTCATATTCATCAA
LOC_Os05g50660
Os.22458.1.S1_s_at--773--3131Chr05:28958875..28958899 (25 bp)
AATTATTCCACCACTAATGTGCTAG
LOC_Os05g50660
Os.22458.1.S1_s_at--330--4371Chr05:28958885..28958909 (25 bp)
CCACTAATGTGCTAGAAGACTCTTA
LOC_Os05g50660
Target Sequence 
TCTGGCAAGAGGTGGAGAGATCATCTTTATTGGTGGGGGATGATTTANATATACTGAATACATCGGCAGATGATTCAAGG
ACGGATGGACTGTATGATGATACTGAGGTGGAANGTATGTCAAGGATGTTTAGTGGTGCGAATGCTTCATCTTTGTCATT
GGCATCAACTGACTCTTCATATTCATCAAATTATTCCACCACTAATGTGCTAGAAGACTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22458.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis