Browse Element(s) Details


Os.15872.1.S1_at

Description gb:AK061818.1
DB_XREF= gi:32971836
TID=Os.15872.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.15872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B08, full insert sequence.
FL= gb:AK061818.1 gb:AK066062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5071010/11Late embryogenesis abundant protein Lea14-A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009644biological_processresponse to high light intensity
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15872.1.S1_at--851--7231Chr05:28986712..28986736 (25 bp)
GTCGCTGGACAGCTTGTCGTTCAAG
LOC_Os05g50710
Os.15872.1.S1_at--683--7991Chr05:28986686..28986710 (25 bp)
GGATGAGCCGCGAGTGCATCACCGT
LOC_Os05g50710
Os.15872.1.S1_at--470--2591NONE
AACGTTGTGGCGTCCGGCACGATGC
NONE
Os.15872.1.S1_at--1155--7611Chr05:28986337..28986361 (25 bp)
GGGACATCGACTACCAGCTCGACGT
LOC_Os05g50710
Os.15872.1.S1_at--677--8131Chr05:28986228..28986252 (25 bp)
GGACATGTTCTAATTATCTTATCTC
LOC_Os05g50710
Os.15872.1.S1_at--1023--3651Chr05:28986211..28986235 (25 bp)
CTTATCTCTAATCTCATCAACCAAC
LOC_Os05g50710
Os.15872.1.S1_at--526--6391Chr05:28986183..28986207 (25 bp)
GATCGATCGAACTCTCTGTATGTGT
LOC_Os05g50710
Os.15872.1.S1_at--987--3871Chr05:28986168..28986192 (25 bp)
CTGTATGTGTGATGTGTCTCGCGAA
LOC_Os05g50710
Os.15872.1.S1_at--329--9511Chr05:28986152..28986176 (25 bp)
TCTCGCGAATAATGGCAGCTGCTCT
LOC_Os05g50710
Os.15872.1.S1_at--739--6731Chr05:28986119..28986143 (25 bp)
GTTCTTCTTGCCCTGCATAGTATAG
LOC_Os05g50710
Os.15872.1.S1_at--1054--131Chr05:28986070..28986094 (25 bp)
ATTACCTCTATTCCTAATGGTTGCA
LOC_Os05g50710
Target Sequence 
GTCGCTGGACAGCTTGTCGTTCAAGGGGATGAGCCGCGAGTGCATCACCGTGCACAGCAACGTCAACGTCTCCAACCCCT
ACGACCACCGCCTCCCCATCTGCGAGCTCACCTACACCCTCAAGTGCGCCGGCAACGTTGTGGCGTCCGGCACGATGCCC
GATCCGGGGTGGATCGCGGCGAGCGACACGACGAAGCTGGAGATACCGGCCAAGATCCCCTACGACTTCCTCATCTCGCT
GGTGAAGGACGTGGGCCGGGACTGGGACATCGACTACCAGCTCGACGTCGGCCTCACCATCGACCTCCCCATCGTCGGCA
ACTTCACCATCCCGCTCTCCACCAGCGGCGAGATGAAGCTCCCCACACTCAAGGACATGTTCTAATTATCTTATCTCTAA
TCTCATCAACCAACTCCGATCGATCGAACTCTCTGTATGTGTGATGTGTCTCGCGAATAATGGCAGCTGCTCTGCACCTG
TGTTCTTCTTGCCCTGCATAGTATAGCATGGCTGTATGAGCNGCTGAAAAATTACCTCTATTCCTAATGGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis