Browse Element(s) Details


OsAffx.21929.2.S1_at

Description gb:NM_189199.1
DB_XREF= gi:34905481
GEN=P0682B08.16
TID=OsAffx.21929.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0682B08.16 (P0682B08.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g506905/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21929.2.S1_at--91--2231NONE
ACAAGTGGGACTATGAGACAACACC
NONE
OsAffx.21929.2.S1_at--668--3191NONE
CAAGTGGGACTATGAGACAACACCA
NONE
OsAffx.21929.2.S1_at--233--8651NONE
TGGGACTATGAGACAACACCACGAG
NONE
OsAffx.21929.2.S1_at--431--7631NONE
GGGACTATGAGACAACACCACGAGG
NONE
OsAffx.21929.2.S1_at--455--8131NONE
GGACTATGAGACAACACCACGAGGA
NONE
OsAffx.21929.2.S1_at--135--5711NONE
GACTATGAGACAACACCACGAGGAG
NONE
OsAffx.21929.2.S1_at--788--2014Chr01:11069889..11069908 (20 bp)
ACTATGAGACAACACCACGAGGAGG
NONE
OsAffx.21929.2.S1_at--162--3694Chr01:11069889..11069909 (21 bp)
CTATGAGACAACACCACGAGGAGGA
NONE
OsAffx.21929.2.S1_at--586--10114Chr01:11069889..11069910 (22 bp)
TATGAGACAACACCACGAGGAGGAG
NONE
OsAffx.21929.2.S1_at--703--7994Chr01:11069907..11069931 (25 bp)
GGAGGCGGTGGCCTTCGGCCGGTAT
NONE
OsAffx.21929.2.S1_at--500--8453Chr01:11069915..11069939 (25 bp)
TGGCCTTCGGCCGGTATCTCTGCGG
NONE
Target Sequence 
ACAAGTGGGACTATGAGACAACACCACGAGGAGGAGGCGGTGGCCTTCGGCCGGTATCTCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21929.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis