Browse Element(s) Details


OsAffx.15184.1.S1_at

Description tigr:9633.m04774
TID=OsAffx.15184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5070011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15184.1.S1_at--477--10011Chr05:28981727..28981751 (25 bp)
TAGGAAGCAGCCTGGCCGGAAACCG
LOC_Os05g50700
OsAffx.15184.1.S1_at--889--8131Chr05:28981744..28981768 (25 bp)
GGAAACCGGGCGTTCGTACTGCCAG
LOC_Os05g50700
OsAffx.15184.1.S1_at--476--6491Chr05:28981755..28981779 (25 bp)
GTTCGTACTGCCAGGCCCAAAAGAA
LOC_Os05g50700
OsAffx.15184.1.S1_at--1038--4071Chr05:28981963..28981987 (25 bp)
CGACCTTTGGGCATGGCGCAAGTAT
LOC_Os05g50700
OsAffx.15184.1.S1_at--250--1431Chr05:28981992..28982016 (25 bp)
AGAAACCTATCAAGGGCTCGCCGTA
LOC_Os05g50700
OsAffx.15184.1.S1_at--414--9851Chr05:28982142..28982166 (25 bp)
TACAAGTGCAGTAGCCTCAAGGCGT
LOC_Os05g50700
OsAffx.15184.1.S1_at--387--3451Chr05:28982150..28982174 (25 bp)
CAGTAGCCTCAAGGCGTGCATGGCG
LOC_Os05g50700
OsAffx.15184.1.S1_at--264--6511Chr05:28982454..28982478 (25 bp)
GATATGAACGATTTCTTTGGCCCCT
LOC_Os05g50700
OsAffx.15184.1.S1_at--552--10571Chr05:28982466..28982490 (25 bp)
TTCTTTGGCCCCTTCGACGATGATC
LOC_Os05g50700
OsAffx.15184.1.S1_at--151--1891Chr05:28982482..28982506 (25 bp)
ACGATGATCTCGACCACTTTTTGGA
LOC_Os05g50700
OsAffx.15184.1.S1_at--287--6411Chr05:28982487..28982511 (25 bp)
GATCTCGACCACTTTTTGGATGACG
LOC_Os05g50700
Target Sequence 
TAGGAAGCAGCCTGGCCGGAAACCGGGCGTTCGTACTGCCAGGCCCAAAAGAAGCAAGAAGAGCCAGCTGAAGAAAGTGG
TGTGCGAGGTGCCGGTTGCCGACGGCGGCGTCTCCACCGACCTTTGGGCATGGCGCAAGTATGGCCAGAAACCTATCAAG
GGCTCGCCGTATCCTCGGGGATACTACAAGTGCAGTAGCCTCAAGGCGTGCATGGCGAGGAAGATGGTGGAGCGGTCGCC
GGAGAAGCCCGGGGTGCTGGTCATCACCTACATCGCCGAGCACTGCCACGCCGTGCCCACGCAGCTCAACTCGCTGGCCG
GCACCACGCGCAACAACAAGCCGGCGTCCCCTGACCAGCAGCAGCAGCAGCAGCCGTCTCCCGGCGGCGCGTCGACGGAC
GAGGCGGCGGCGGCGGCGGCCAAGACGGAGGACAGCGCCGACACTACGTGCTCCATGGCGGACGACGAGAACGACCTCTG
GGCGCCGGTGGAGATGGATATGAACGATTTCTTTGGCCCCTTCGACGATGATCTCGACCACTTTTTGGATGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis