Browse Element(s) Details


OsAffx.4679.1.S1_at

Description tigr:9633.m04777
TID=OsAffx.4679.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5073011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4679.1.S1_at--462--6731Chr05:28994743..28994767 (25 bp)
GTTCATGGAGTCACCGGCGGACGAC
LOC_Os05g50730
OsAffx.4679.1.S1_at--1130--9371Chr05:28994679..28994703 (25 bp)
TCGAGGGACGTCATCCGGCGGTACC
LOC_Os05g50730
OsAffx.4679.1.S1_at--1112--9591Chr05:28994669..28994693 (25 bp)
TCATCCGGCGGTACCTGACCAAGAT
LOC_Os05g50730
OsAffx.4679.1.S1_at--981--4671Chr05:28994662..28994686 (25 bp)
GCGGTACCTGACCAAGATCTCCAGA
LOC_Os05g50730
OsAffx.4679.1.S1_at--284--9931Chr05:28994658..28994682 (25 bp)
TACCTGACCAAGATCTCCAGACGGT
LOC_Os05g50730
OsAffx.4679.1.S1_at--738--5851Chr05:28994653..28994677 (25 bp)
GACCAAGATCTCCAGACGGTTCAGG
LOC_Os05g50730
OsAffx.4679.1.S1_at--1047--3371Chr05:28994641..28994665 (25 bp)
CAGACGGTTCAGGAGGACGGCTCCC
LOC_Os05g50730
OsAffx.4679.1.S1_at--133--4791Chr05:28994593..28994617 (25 bp)
GCTCCGCCGTCTACGGAAGAGCCGG
LOC_Os05g50730
OsAffx.4679.1.S1_at--707--3931Chr05:28994512..28994536 (25 bp)
CGGGCGAGACGACTCCCTTCTCGAG
LOC_Os05g50730
OsAffx.4679.1.S1_at--926--5711Chr05:28994502..28994526 (25 bp)
GACTCCCTTCTCGAGAAGCAGGACG
LOC_Os05g50730
OsAffx.4679.1.S1_at--831--2711Chr05:28994487..28994511 (25 bp)
AAGCAGGACGGCATTGCCAGCGCCA
LOC_Os05g50730
Target Sequence 
GTTCATGGAGTCACCGGCGGACGACGACGGCGAGGAGGTCGCCGAGCCGAGGAGAGCGCCGCCGTCGAGGGACGTCATCC
GGCGGTACCTGACCAAGATCTCCAGACGGTTCAGGAGGACGGCTCCCCGCGCCGCCGGCGAGGCGAGGGGGCTCCGCCGT
CTACGGAAGAGCCGGTCAGCGTCGGCGGCGACGAGCCTGTCGGCGTCCAGCTCGGCGGCGGCGGCGCCGTCCGGGCGAGA
CGACTCCCTTCTCGAGAAGCAGGACGGCATTGCCAGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis