Browse Element(s) Details


Os.55821.1.S1_at

Description gb:AK108848.1
DB_XREF= gi:32994057
TID=Os.55821.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55821 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A04, full insert sequence.
FL= gb:AK108848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5068011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50640Os.54158.1.S1_at11/115+28945595..28949500hAT family dimerisation domain containing protein, expressed
LOC_Os05g50650Os.36306.2.S1_x_at2/115+28950692..28952249retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g50660Os.48043.1.S2_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.48043.1.S1_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50660Os.22458.1.S1_s_at11/115+28955277..28963037PX domain containing protein, expressed
LOC_Os05g50670OsAffx.4678.1.S1_at11/115+28963570..28963788hypothetical protein
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55821.1.S1_at--673--4692Chr05:28968652..28968676 (25 bp)
GCGGCGGGTCAAAGCGCCACCACAA
LOC_Os05g50680
Os.55821.1.S1_at--575--1832Chr05:28968733..28968757 (25 bp)
ACGCGAAGCCGCACGAAGACAACAA
LOC_Os05g50680
Os.55821.1.S1_at--742--3331Chr05:28968744..28968768 (25 bp)
CACGAAGACAACAAGGGCGGCGCGA
LOC_Os05g50680
Os.55821.1.S1_at--560--771Chr05:28968921..28968945 (25 bp)
ATGGGCGACCTCCTGATGTCGTACC
LOC_Os05g50680
Os.55821.1.S1_at--490--771Chr05:28968936..28968960 (25 bp)
ATGTCGTACCTGTCGCTCAACTCAA
LOC_Os05g50680
Os.55821.1.S1_at--81--5751Chr05:28968996..28969020 (25 bp)
GACGTCTGGGAAGCCGTCTTCGCCA
LOC_Os05g50680
Os.55821.1.S1_at--582--511Chr05:28969044..28969068 (25 bp)
ATCGATCTCCATCCTTGTAACAAAT
LOC_Os05g50680
Os.55821.1.S1_at--475--9011Chr05:28969068..28969092 (25 bp)
TGCAATGTACAGCTTGTTCTTCCAA
LOC_Os05g50680
Os.55821.1.S1_at--618--6731Chr05:28969083..28969107 (25 bp)
GTTCTTCCAAGCATCGATTGTTCTC
LOC_Os05g50680
Os.55821.1.S1_at--489--10571Chr05:28969103..28969127 (25 bp)
TTCTCCGGAACATGTAACTTAATTT
LOC_Os05g50680
Os.55821.1.S1_at--167--3131Chr05:28969123..28969147 (25 bp)
AATTTATTATTAGTAGCCGCTTAAG
LOC_Os05g50680
Target Sequence 
GCGGCGGGTCAAAGCGCCACCACAAGAACCCACCTCGCCGCGTGCCTCGCCGCGCGCCGCCGAGAGGCGCCAATGCCGGC
GACGCGAAGCCGCACGAAGACAACAAGGGCGGCGCGAAGAAAGCCGACGACAAGCACGGCGGCGGCGTCGTCGGCGTGGC
CGCGGCGGGCAGCATGGCGGTGGTGAAGCGGTCGCACAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTGG
TGGAGCGGCGCATCTGTGGCGCCGACGCCATGGGCGACCTCCTGATGTCGTACCTGTCGCTCAACTCAAGGCGCCACCAC
CCGGCCATCCTCGCCGCCTTCGAGGACGTCTGGGAAGCCGTCTTCGCCACGCCCTGATCGATCGATCGATCGATCGATCT
CCATCCTTGTAACAAATGCAATGTACAGCTTGTTCTTCCAAGCATCGATTGTTCTCCGGAACATGTAACTTAATTTATTA
TTAGTAGCCGCTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis