Browse Element(s) Details


Os.54733.1.S1_at

Description gb:AK106631.1
DB_XREF= gi:32991840
TID=Os.54733.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-D02, full insert sequence.
FL= gb:AK106631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5073010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50680Os.55821.1.S1_at11/115+28968015..28969162expressed protein
LOC_Os05g50680Os.36376.2.S1_x_at2/115+28968015..28969162expressed protein
LOC_Os05g50690OsAffx.27395.1.S1_at11/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_x_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50690OsAffx.21929.2.S1_at5/115+28974971..28979008pentatricopeptide, putative, expressed
LOC_Os05g50700OsAffx.15184.1.S1_at11/115+28981383..28982543WRKY DNA binding domain containing protein, expressed
LOC_Os05g50710Os.15872.1.S1_at10/115+28986036..28987287Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os05g50720Os.51602.1.S1_at11/115+28987934..28988957Harpin-induced protein 1 containing protein, expressed
LOC_Os05g50730OsAffx.4679.1.S1_at11/115+28993775..28995257expressed protein
LOC_Os05g50730Os.54733.1.S1_at10/115+28993775..28995257expressed protein
LOC_Os05g50740OsAffx.22940.2.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.1.S1_s_at11/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.3.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.5.S1_x_at10/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.3.S1_x_at9/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740Os.35344.18.S1_x_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.22940.2.S1_at8/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50740OsAffx.31552.2.S1_at1/115+29000695..29008248Transposable element protein, putative, MuDR
LOC_Os05g50750Os.7939.1.S1_at11/115+29010289..29015582AAA-type ATPase family protein, putative, expressed
LOC_Os05g50750Os.32943.2.S1_x_at1/115+29010289..29015582AAA-type ATPase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54733.1.S1_at--452--10011Chr05:28994243..28994267 (25 bp)
TAGCTTACTACTAATCCTGATGGTT
LOC_Os05g50730
Os.54733.1.S1_at--690--5451Chr05:28994206..28994230 (25 bp)
GAACGACCCATCACAAGTCTCAATG
LOC_Os05g50730
Os.54733.1.S1_at--1120--3151Chr05:28994180..28994204 (25 bp)
AATTGTGGTCAACGGCCGAAGCTTC
LOC_Os05g50730
Os.54733.1.S1_at--265--4451Chr05:28994166..28994190 (25 bp)
GCCGAAGCTTCCACCTAAATTTCAG
LOC_Os05g50730
Os.54733.1.S1_at--588--7471Chr05:28994024..28994048 (25 bp)
GTGTGTTTCACGTCCTTAATTTTAG
LOC_Os05g50730
Os.54733.1.S1_at--509--1131Chr05:28993933..28993957 (25 bp)
AGTGCTCTTTTTAGGCTTCTTTATC
LOC_Os05g50730
Os.54733.1.S1_at--692--3651Chr05:28993918..28993942 (25 bp)
CTTCTTTATCCCTCATCTAGTGTAG
LOC_Os05g50730
Os.54733.1.S1_at--791--8571Chr05:28993888..28993912 (25 bp)
TGGATTGTTTTGTGTGCTCGCGCTC
LOC_Os05g50730
Os.54733.1.S1_at--245--7371Chr05:28993814..28993838 (25 bp)
GTGACTCGCAACACGACATGTAATT
LOC_Os05g50730
Os.54733.1.S1_at--440--9931Chr05:28993790..28993814 (25 bp)
TACGTACATTCTTGCCATTTGACTG
LOC_Os05g50730
Os.54733.1.S1_at--199--3591Chr05:28993775..28993799 (25 bp)
CATTTGACTGGCTAGTTCTGGCTTT
NONE
Target Sequence 
TAGCTTACTACTAATCCTGATGGTTACCAAGACTAACGAACGACCCATCACAAGTCTCAATGAAATTGTGGTCAACGGCC
GAAGCTTCCACCTAAATTTCAGAAAAGACGGAGAAGAATTCAAAGCACTAGTACAAATTATTGAAGTTTGATGAAAATGC
GGCGCTTGAGGTTGCTAAAGATTTCTCATCTCTTTTGTTTTATGGGTGTGGGTGAGTGTGTGTGTTTCACGTCCTTAATT
TTAGTTTAAGGCTTTAACCCTTGGTGAATGTTTATTTTTTTTCCTTTTTCTTTGTTAGGAGAGTGGGAAAAGTGCTCTTT
TTAGGCTTCTTTATCCCTCATCTAGTGTAGAAGCGTGGATTGTTTTGTGTGCTCGCGCTCTTTCCGTGGTTTTTTTTCTC
TCTCGTCTTTCTAGTTTGCTTTTGTACAAGTGACTCGCAACACGACATGTAATTACGTACATTCTTGCCATTTGACTGGC
TAGTTCTGGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis