Browse Element(s) Details


Os.32943.2.S1_x_at

Description gb:NM_188560.1
DB_XREF= gi:34904203
GEN=P0492F05.26
TID=Os.32943.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492F05.26 (P0492F05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0492F05.26 (P0492F05.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1266011/11AAA-type ATPase family protein, putative, expressed
LOC_Os05g507501/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12630Os.47130.4.A1_x_at2/111+6951550..6951876retrotransposon protein, putative, unclassified
LOC_Os01g12640OsAffx.22093.1.S1_x_at11/111+6953838..6955539expressed protein
LOC_Os01g12640OsAffx.22093.1.S1_at11/111+6953838..6955539expressed protein
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32943.2.S1_x_at--1140--9991Chr01:6968967..6968991 (25 bp)
TAGCTGCCAAAGTATCACCGACGAT
LOC_Os01g12660
Os.32943.2.S1_x_at--507--6151Chr01:6968929..6968953 (25 bp)
GAGGTCGACAGCATGCTTGGTCAGC
LOC_Os01g12660
Os.32943.2.S1_x_at--170--6751Chr01:6968858..6968882 (25 bp)
GTTCATGACACACTGGGATGGCCTC
LOC_Os01g12660
Os.32943.2.S1_x_at--624--2411Chr01:6968816..6968840 (25 bp)
AAAAATTCTTGTCCTTGCTGCGACC
LOC_Os01g12660
Os.32943.2.S1_x_at--553--3252Chr05:29011590..29011609 (20 bp)
CAACCGACCCTTTGATCTTGATGAA
LOC_Os05g50750
Os.32943.2.S1_x_at--823--3591Chr01:6968765..6968786 (22 bp)
CATTCGAAGGTTTGAGCGCAGGATC
LOC_Os01g12660
Os.32943.2.S1_x_at--210--7811Chr01:6968621..6968645 (25 bp)
GGTCGGCCTGCCATCATTGGAAAGT
LOC_Os01g12660
Os.32943.2.S1_x_at--188--8831Chr01:6968589..6968613 (25 bp)
TGATTTTGAGGAGCCTTCTGTCGAA
LOC_Os01g12660
Os.32943.2.S1_x_at--517--2911Chr01:6968536..6968560 (25 bp)
AAGGAACTAGCCACCATGACTGAAG
LOC_Os01g12660
Os.32943.2.S1_x_at--962--6191Chr01:6968232..6968256 (25 bp)
GAGGCAATGCTTCAGATGCTTCGAA
LOC_Os01g12660
Os.32943.2.S1_x_at--759--5991Chr01:6968191..6968215 (25 bp)
GAGACGATCATACTAAGGCCACTAA
LOC_Os01g12660
Target Sequence 
TAGCTGCCAAAGTATCACCGACGATCATTTTTGTCGATGAGGTCGACAGCATGCTTGGTCAGCGGAACAGAGCTGGAGAG
CACGAGGCAATGAGGAAGATAAAAAATGAGTTCATGACACACTGGGATGGCCTCTTGTCAAGACCAGATCAAAAAATTCT
TGTCCTTGCTGCGACCAACCGACCCTTTGATCTTGATGAAGCTATCATTCGAAGGTTTGAGCGCAGGATCATGGTCGGCC
TGCCATCATTGGAAAGTCGGGAATTGATTTTGAGGAGCCTTCTGTCGAAGGAGAAAGTTGATGGCGGTCTAGACTATAAG
GAACTAGCCACCATGACTGAAGGATATAGTGGCAGTGATCTAAAGGAGAAGAAGCGGGAACAAGGAGGCAATGCTTCAGA
TGCTTCGAAGATGAAAGAGAAGGACGAGACGATCATACTAAGGCCACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32943.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis