Browse Element(s) Details


Os.12715.1.S1_at

Description gb:AK059314.1
DB_XREF= gi:32969332
TID=Os.12715.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492F05.25 (P0492F05.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-G12, full insert sequence.
FL= gb:AK059314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1265011/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12630Os.47130.4.A1_x_at2/111+6951550..6951876retrotransposon protein, putative, unclassified
LOC_Os01g12640OsAffx.22093.1.S1_x_at11/111+6953838..6955539expressed protein
LOC_Os01g12640OsAffx.22093.1.S1_at11/111+6953838..6955539expressed protein
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12715.1.S1_at--819--6671Chr01:6966267..6966291 (25 bp)
GTTGCTTTCTGTTCTTGGAAGCTGC
LOC_Os01g12650
Os.12715.1.S1_at--93--3631Chr01:6966300..6966423 (25 bp)
CTTGACCTTGGTTTATATTGTGTTT
LOC_Os01g12650
Os.12715.1.S1_at--643--7431Chr01:6966418..6966442 (25 bp)
GTGTTTGTGGTGCTGCACACAGTCC
LOC_Os01g12650
Os.12715.1.S1_at--373--5131Chr01:6966432..6966456 (25 bp)
GCACACAGTCCCAATTCTGTATGAG
LOC_Os01g12650
Os.12715.1.S1_at--540--651Chr01:6966595..6966619 (25 bp)
ATGCAGTGCCTCGTGGCAGGTGATA
LOC_Os01g12650
Os.12715.1.S1_at--6--8591Chr01:6966635..6966659 (25 bp)
TGGTTCTTGAGATGCACTGCTGTCA
LOC_Os01g12650
Os.12715.1.S1_at--357--1991Chr01:6966650..6966674 (25 bp)
ACTGCTGTCACCTATTGCCTTGTGT
LOC_Os01g12650
Os.12715.1.S1_at--193--3772Chr01:6966684..6966708 (25 bp)
CTCTTTTGTTGTCTGATCTTGATGG
LOC_Os01g12650
Os.12715.1.S1_at--893--631Chr01:6966754..6966778 (25 bp)
ATGCTTTGCTCCATCGCTGTTTGAT
LOC_Os01g12650
Os.12715.1.S1_at--353--6411Chr01:6966783..6966807 (25 bp)
GATCTGTAAGATGTCGCATGCATAT
LOC_Os01g12650
Os.12715.1.S1_at--981--8771Chr01:6966822..6966846 (25 bp)
TGTTTTGTTACTAAGATTGCTGCAT
LOC_Os01g12650
Target Sequence 
GTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTGGTTTATATTGTGTTTGTGGTGCTGCACACAGTCCCAA
TTCTGTATGAGAAGTATGAAGATCAGATTGACTCATATGGTGAGAAGGGGTGGGTTGAGATTAAGAAACAGTATGCTGTG
NTCGATGCTAAGGTCCTGAGTAAAGTACCAAGGGGCCCCTTGAAAGACAAGAAGCACTAGGAAGAGGTGATGCAGTGCCT
CGTGGCAGGTGATAGTAGTGGTTGGGTTGTGGTTCTTGAGATGCACTGCTGTCACCTATTGCCTTGTGTTGTGNATGGCT
CTTTTGTTGTCTGATCTTGATGGGAGTAGCTGAGTAGCTTGCGCTACNACAGTATGCAGCTGCAGCGCATGCTTTGCTCC
ATCGCTGTTTGATTTTTGATCTGTAAGATGTCGCATGCATATTGTTTATGCGATATTGTTTTGTTACTAAGATTGCTGCA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis