Browse Element(s) Details


Os.6090.1.S1_a_at

Description gb:AK066242.1
DB_XREF= gi:32976260
TID=Os.6090.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492F05.28 (P0492F05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013054K11, full insert sequence.
FL= gb:AK066242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1267010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12630Os.47130.4.A1_x_at2/111+6951550..6951876retrotransposon protein, putative, unclassified
LOC_Os01g12640OsAffx.22093.1.S1_x_at11/111+6953838..6955539expressed protein
LOC_Os01g12640OsAffx.22093.1.S1_at11/111+6953838..6955539expressed protein
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6090.1.S1_a_at--655--10411Chr01:6979478..6979502 (25 bp)
TTATTATCATGGAAGCAGCTACGAC
LOC_Os01g12670
Os.6090.1.S1_a_at--364--5071Chr01:6979492..6979516 (25 bp)
GCAGCTACGACATGGGAACACTCAT
LOC_Os01g12670
Os.6090.1.S1_a_at--571--2471Chr01:6979508..6979927 (25 bp)
AACACTCATTGAGGTCCGCAGGATG
LOC_Os01g12670
Os.6090.1.S1_a_at--1062--7791Chr01:6979915..6979939 (25 bp)
GGTCCGCAGGATGTGGGATTCCTTT
LOC_Os01g12670
Os.6090.1.S1_a_at--312--7491Chr01:6979927..6979951 (25 bp)
GTGGGATTCCTTTATTAGAGCTGGA
LOC_Os01g12670
Os.6090.1.S1_a_at--943--10031NONE
TAGAGCTGGAGGAAGCCGAATACCT
NONE
Os.6090.1.S1_a_at--555--1671Chr01:6980461..6980485 (25 bp)
AGCCGAATACCTGGGCACTGGGTTC
LOC_Os01g12670
Os.6090.1.S1_a_at--361--4751Chr01:6980500..6980524 (25 bp)
GCTGATGAAGTATGGGCATCCTATT
LOC_Os01g12670
Os.6090.1.S1_a_at--1004--8251Chr01:6980514..6980538 (25 bp)
GGCATCCTATTTAGTGCAGCCCAAC
LOC_Os01g12670
Os.6090.1.S1_a_at--765--3671Chr01:6980520..6980544 (25 bp)
CTATTTAGTGCAGCCCAACTGTCCA
LOC_Os01g12670
Os.6090.1.S1_a_at--1091--2551Chr01:6980536..6980560 (25 bp)
AACTGTCCAAGTAACTCCACTTAGC
LOC_Os01g12670
Target Sequence 
TTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAG
GAAGCCGAATACCTGGGCACTGGGTTCAGCCACCCCCTCCAGCTGATGAAGTATGGGCATCCTATTTAGTGCAGCCCAAC
TGTCCAAGTAACTCCACTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6090.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis