Browse Element(s) Details


Os.7995.1.S1_x_at

Description gb:D15521
DB_XREF= gi:13895858
DB_XREF=RICC0759A
CLONE=C0759
TID=Os.7995.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0443E07.26 (P0443E07.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1269011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12700OsAffx.15054.1.S1_x_at5/111+7011933..7015181Myb-like DNA-binding domain containing protein
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7995.1.S1_x_at--172--1871Chr01:7006737..7006761 (25 bp)
ACGACGAGGCACCAGATAAGGCGCA
LOC_Os01g12690
Os.7995.1.S1_x_at--1106--6191Chr01:7006742..7006766 (25 bp)
GAGGCACCAGATAAGGCGCAAGCGC
LOC_Os01g12690
Os.7995.1.S1_x_at--122--1611Chr01:7006785..7006809 (25 bp)
AGCTGCGTTGACACGTGCGGCGTCA
LOC_Os01g12690
Os.7995.1.S1_x_at--368--4231Chr01:7006897..7006921 (25 bp)
CCGACTTCCGGTCGTCCATGGTGGA
LOC_Os01g12690
Os.7995.1.S1_x_at--432--4851Chr01:7007063..7007087 (25 bp)
GCTACTAGCTAGCTTATTAGCCTTA
LOC_Os01g12690
Os.7995.1.S1_x_at--656--3071Chr01:7007105..7007129 (25 bp)
AATCACCGTGTTTAATTAATTAGCT
LOC_Os01g12690
Os.7995.1.S1_x_at--525--3131Chr01:7007118..7007142 (25 bp)
AATTAATTAGCTCAGTCCCAGGATG
LOC_Os01g12690
Os.7995.1.S1_x_at--199--7251Chr01:7007132..7007156 (25 bp)
GTCCCAGGATGATTAATCACTGAGA
LOC_Os01g12690
Os.7995.1.S1_x_at--426--8891Chr01:7007152..7007176 (25 bp)
TGAGATTAGCCAGAGTACTACTCCA
LOC_Os01g12690
Os.7995.1.S1_x_at--854--3071Chr01:7007186..7007210 (25 bp)
AATCATGTGTGTTCATTACTTAATC
LOC_Os01g12690
Os.7995.1.S1_x_at--116--6751Chr01:7007196..7007220 (25 bp)
GTTCATTACTTAATCTTTCTCAGAG
LOC_Os01g12690
Target Sequence 
ACGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGCGGCGTCAGGGACGG
GTTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACN
CCGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGANCTGGAGCNGCTGCTCCGG
TCGTACCTCTCCCTGAACGCGCCGCGCCACCACNCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATNG
CGGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCC
AGGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCANTAATCATGTGTGTTCATTACTTAATCTTTCTC
AGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7995.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis