Browse Element(s) Details


Os.5608.2.S1_at

Description gb:AK121458.1
DB_XREF= gi:37991081
TID=Os.5608.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0443E07.21 (P0443E07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143J08, full insert sequence.
FL= gb:AK121458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1268011/11C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12700OsAffx.15054.1.S1_x_at5/111+7011933..7015181Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5608.2.S1_at--500--7071Chr01:6990400..6990424 (25 bp)
GTAATAAGTCCATCTGTCTCAGCCT
LOC_Os01g12680
Os.5608.2.S1_at--82--7171Chr01:6990415..6990439 (25 bp)
GTCTCAGCCTCTCAGAAGCATATGC
LOC_Os01g12680
Os.5608.2.S1_at--968--8571Chr01:6990456..6990480 (25 bp)
TGGTTCGATATTGTGGTCATCCCCG
LOC_Os01g12680
Os.5608.2.S1_at--960--7111Chr01:6990471..6990495 (25 bp)
GTCATCCCCGGTAGATCGTGGCGTA
LOC_Os01g12680
Os.5608.2.S1_at--180--6311Chr01:6990509..6990533 (25 bp)
GATGAAGTACTACCAACGTCTCCCA
LOC_Os01g12680
Os.5608.2.S1_at--990--9851Chr01:6990551..6990575 (25 bp)
TACAGTACACTTGCGACTTTGCCAA
LOC_Os01g12680
Os.5608.2.S1_at--156--2431Chr01:6990575..6990599 (25 bp)
AAAAGACAGGCCGACTCATCCAGCT
LOC_Os01g12680
Os.5608.2.S1_at--688--1231Chr01:6990596..6990620 (25 bp)
AGCTCGGCCCAATACCAAAGGACGG
LOC_Os01g12680
Os.5608.2.S1_at--1105--5511Chr01:6990678..6990702 (25 bp)
GAAAAGGTCCATTTCGCATCCCTTA
LOC_Os01g12680
Os.5608.2.S1_at--105--4971Chr01:6990693..6990717 (25 bp)
GCATCCCTTAGCTATGGACCGAGTT
LOC_Os01g12680
Os.5608.2.S1_at--267--2631Chr01:6990762..6990786 (25 bp)
AACCGGGTATTGACATCCTTGACTC
LOC_Os01g12680
Target Sequence 
GTAATAAGTCCATCTGTCTCAGCCTCTCAGAAGCATATGCACCATGCAGTGTACAATGGTTCGATATTGTGGTCATCCCC
GGTAGATCGTGGCGTACTGGCGTGAGTATGATGAAGTACTACCAACGTCTCCCATTGTTGTAGACTTGTAGTACAGTACA
CTTGCGACTTTGCCAAAAAGACAGGCCGACTCATCCAGCTCGGCCCAATACCAAAGGACGGTTGGGTGGAATAAGTTCAC
TTTAGGTCTCTCAATTTATAAAACTGGATCACAAGAAGGAAAAGGTCCATTTCGCATCCCTTAGCTATGGACCGAGTTTT
GATTCGCGTCCCTCCATCACAAAAGACTCTTTTAACTATTAAAACCGGGTATTGACATCCTTGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5608.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis