Browse Element(s) Details


Os.32943.1.S1_at

Description gb:AK102301.1
DB_XREF= gi:32987510
TID=Os.32943.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492F05.26 (P0492F05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089N14, full insert sequence.
FL= gb:AK102301.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1266010/11AAA-type ATPase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12630Os.47130.4.A1_x_at2/111+6951550..6951876retrotransposon protein, putative, unclassified
LOC_Os01g12640OsAffx.22093.1.S1_x_at11/111+6953838..6955539expressed protein
LOC_Os01g12640OsAffx.22093.1.S1_at11/111+6953838..6955539expressed protein
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32943.1.S1_at--610--8271Chr01:6968428..6968527 (25 bp)
GGCAGTGATCTAAAGAACCTGTGCA
LOC_Os01g12660
Os.32943.1.S1_at--781--5431Chr01:6968414..6968438 (25 bp)
GAACCTGTGCACAACAGCAGCGTAT
LOC_Os01g12660
Os.32943.1.S1_at--249--2491Chr01:6968402..6968426 (25 bp)
AACAGCAGCGTATCGTCCAGTGAGG
LOC_Os01g12660
Os.32943.1.S1_at--496--3991Chr01:6968389..6968413 (25 bp)
CGTCCAGTGAGGGAACTGATCCAAA
LOC_Os01g12660
Os.32943.1.S1_at--620--2071Chr01:6967904..6967928 (25 bp)
ACATACTTTCTCTGAACTATCTAAA
LOC_Os01g12660
Os.32943.1.S1_at--978--3231Chr01:6967832..6967856 (25 bp)
CAACCATGTGAAAATAGTCCAGTGT
LOC_Os01g12660
Os.32943.1.S1_at--428--7271Chr01:6967816..6967840 (25 bp)
GTCCAGTGTTTTAAGTTCCACCAGT
LOC_Os01g12660
Os.32943.1.S1_at--160--2831Chr01:6967804..6967828 (25 bp)
AAGTTCCACCAGTTAAGAATGTTTG
LOC_Os01g12660
Os.32943.1.S1_at--545--8771Chr01:6967785..6967809 (25 bp)
TGTTTGGGACCAAAGGAGCCTGGTT
LOC_Os01g12660
Os.32943.1.S1_at--514--5971Chr01:6967725..6967749 (25 bp)
GAGAACTTCCATACACAGGGACTAT
LOC_Os01g12660
Os.32943.1.S1_at--932--9851Chr01:6967714..6967738 (25 bp)
TACACAGGGACTATGTTTTGCCTGC
NONE
Target Sequence 
GGCAGTGATCTAAAGAACCTGTGCACAACAGCAGCGTATCGTCCAGTGAGGGAACTGATCCAAAAGGAAAGAAAGAAGGA
ACTGGAGAAGAAGCGGGAACAAGGAGGCAATGCTTCAGATGCTTCGAAGATGAAAGAGAAGGACGAGACGATCATACTAA
GGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGT
GAGCTGAAGCAATGGAATGAGTTGTACGGTGAAGGAGGCTCCAGAAAGAAACAACAGTTGACATACTTTCTCTGAACTAT
CTAAATATCCAGAGTGTATGAACATAATTTGAAAACTAGAATAGACGGAAAACAACCATGTGAAAATAGTCCAGTGTTTT
AAGTTCCACCAGTTAAGAATGTTTGGGACCAAAGGAGCCTGGTTATGAAACCGGTTTTTTTTTGTTGTAAAACTTGATAG
AGAACTTCCATACACAGGGACTATGTTTTGCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis