Browse Element(s) Details


OsAffx.22093.1.S1_at

Description gb:NM_188558.1
DB_XREF= gi:34904199
GEN=P0492F05.24
TID=OsAffx.22093.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0492F05.24 (P0492F05.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1264011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified
LOC_Os01g12600NANA1+6931584..6935002retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12610OsAffx.24317.2.S1_x_at2/111+6937185..6937574hypothetical protein
LOC_Os01g12610OsAffx.30665.1.A1_x_at1/111+6937185..6937574hypothetical protein
LOC_Os01g12630Os.47130.4.A1_x_at2/111+6951550..6951876retrotransposon protein, putative, unclassified
LOC_Os01g12640OsAffx.22093.1.S1_x_at11/111+6953838..6955539expressed protein
LOC_Os01g12640OsAffx.22093.1.S1_at11/111+6953838..6955539expressed protein
LOC_Os01g12650Os.12715.1.S1_at11/111+6964434..6966959reticulon family protein, putative, expressed
LOC_Os01g12660Os.32943.2.S1_x_at11/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12660Os.32943.1.S1_at10/111+6967714..6973508AAA-type ATPase family protein, putative, expressed
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22093.1.S1_at--520--391Chr01:6954790..6954814 (25 bp)
ATCACCGCCGAGGAACGGCGGTTCG
LOC_Os01g12640
OsAffx.22093.1.S1_at--413--9971Chr01:6954745..6954769 (25 bp)
TACCTGAACAAGATCAAACCGCTTT
LOC_Os01g12640
OsAffx.22093.1.S1_at--654--2751Chr01:6954736..6954760 (25 bp)
AAGATCAAACCGCTTTACGTCAAGG
LOC_Os01g12640
OsAffx.22093.1.S1_at--482--9691Chr01:6954732..6954756 (25 bp)
TCAAACCGCTTTACGTCAAGGTCTC
LOC_Os01g12640
OsAffx.22093.1.S1_at--336--4751Chr01:6954491..6954515 (25 bp)
GCTGAAGCAGGTGTGCAAGCGCCTC
LOC_Os01g12640
OsAffx.22093.1.S1_at--109--8691Chr01:6954480..6954504 (25 bp)
TGTGCAAGCGCCTCGGCAAGAGCCG
LOC_Os01g12640
OsAffx.22093.1.S1_at--454--2671Chr01:6954475..6954499 (25 bp)
AAGCGCCTCGGCAAGAGCCGGTCCG
LOC_Os01g12640
OsAffx.22093.1.S1_at--1114--1591Chr01:6954354..6954378 (25 bp)
AGCTGCAGGACGGCATCCAGAGCGC
LOC_Os01g12640
OsAffx.22093.1.S1_at--612--1371Chr01:6954336..6954360 (25 bp)
AGAGCGCCATTGCTCACTGCAAGCG
LOC_Os01g12640
OsAffx.22093.1.S1_at--782--10711Chr01:6954327..6954351 (25 bp)
TTGCTCACTGCAAGCGCTCCTTCAA
LOC_Os01g12640
OsAffx.22093.1.S1_at--1105--9131Chr01:6954191..6954215 (25 bp)
TGCGGTCCATGAGCGACACGAGGGA
LOC_Os01g12640
Target Sequence 
ATCACCGCCGAGGAACGGCGGTTCGCGAAGGAGATGCTGCTCAAGTACCTGAACAAGATCAAACCGCTTTACGTCAAGGT
CTCCCGCCGCTACGGCGAGCGCCTCCGCTTCGCCAGCGCCAGCGAGGGCGAGGAGACGGACCTGGAGCCCGACCCCTCGC
CGTCACCTTCCCCTTCCCCCTCCCCGGCGCCCACCCAGCCTCCTACCGCGGCGGCGGCGGCGGCGGTGGCCCCAGCGCCG
CCGCAGCCGGTCGTCGTCGCCTGCGGCGTGCGCGCGCCCCGCGCCAGCGTGCCAGCCGGGCTGAAGCAGGTGTGCAAGCG
CCTCGGCAAGAGCCGGTCCGCGTCCTCCGCAGTGGCCGCCGCGCCGTCCCCGTCGCTGCCGCCGCCGCCATCCACCGCCG
GGCAGCAGCCGCAGCGCCGCGACGACTCGCTGCTGCAGCTGCAGGACGGCATCCAGAGCGCCATTGCTCACTGCAAGCGC
TCCTTCAACGCCTCCAAAGNNNGGTCGGAGTCGCCATTGCTGCGGTCCATGAGCGACACGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis