Browse Element(s) Details


OsAffx.24317.2.S1_x_at

Description tigr:9634.m02618
TID=OsAffx.24317.2
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2753010/11hypothetical protein
LOC_Os06g3378010/11hypothetical protein
LOC_Os03g429307/11hypothetical protein
LOC_Os11g266405/11hypothetical protein
LOC_Os11g266602/11hypothetical protein
LOC_Os01g126102/11hypothetical protein
LOC_Os11g266301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27480OsAffx.22699.1.S1_x_at1/116+15555366..15562338retrotransposon protein, putative, unclassified, expressed
LOC_Os06g27480Os.52731.1.S1_at1/116+15555366..15562338retrotransposon protein, putative, unclassified, expressed
LOC_Os06g27490NANA6+15562657..15565853hypothetical protein
LOC_Os06g27500NANA6+15567534..15569737hypothetical protein
LOC_Os06g27510OsAffx.27834.1.S1_at11/116+15572832..15573050hypothetical protein
LOC_Os06g27520OsAffx.28563.1.S1_x_at1/116+15583221..15584729hypothetical protein
LOC_Os06g27520OsAffx.16416.1.S1_x_at1/116+15583221..15584729hypothetical protein
LOC_Os06g27530OsAffx.24317.2.S1_x_at10/116+15586279..15587703hypothetical protein
LOC_Os06g27540OsAffx.30032.4.S1_at1/116+15588926..15593922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27550NANA6+15595294..15596839hypothetical protein
LOC_Os06g27560Os.7246.1.S1_s_at11/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27560Os.7246.2.S1_s_at10/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27570NANA6+15605249..15605884hypothetical protein
LOC_Os06g27580NANA6+15607455..15610167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27590OsAffx.15629.1.S1_at5/116+15610977..15611819expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24317.2.S1_x_at--638--2399Chr06:19649778..19649802 (25 bp)
AAACTACAATAGCACACAGCTCAAC
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--651--2239Chr06:19649783..19649807 (25 bp)
ACAATAGCACACAGCTCAACAGTAG
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--633--6459Chr06:19649835..19649859 (25 bp)
GATCACACAGATACATTACCACCTA
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--364--9698Chr06:19649837..19649861 (25 bp)
TCACACAGATACATTACCACCTAAC
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--979--3299Chr06:19649840..19649864 (25 bp)
CACAGATACATTACCACCTAACCAG
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--1146--6212Chr06:19650803..19650827 (25 bp)
GATGGCAAGTCCCACACGTCAGTGT
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--644--8512Chr06:19650805..19650829 (25 bp)
TGGCAAGTCCCACACGTCAGTGTCA
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--1143--5172Chr06:19650807..19650831 (25 bp)
GCAAGTCCCACACGTCAGTGTCACA
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--1003--9194Chr06:19650856..19650880 (25 bp)
TCCACCACAGGCCTGGGCGTGCCCG
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--194--7715Chr06:19650993..19651017 (25 bp)
GGTGGCGCAGCACCGAGCTCCGGGA
LOC_Os06g33780
OsAffx.24317.2.S1_x_at--1145--1075Chr01:6937391..6937415 (25 bp)
AGGGCTCAGCCTCGGGGCTTTACCA
LOC_Os01g12610
Target Sequence 
AAACTACAATAGCACACAGCTCAACAGTAGNCTCACACAGAGACCATACCCNGNAACGATCACACAGATACATTACCACC
TAACCAGNNNNNNNNNNNNCNGNNANTATTTGGAGTTTNTNGATGGCAAGTCCCACACGTCAGTGTCACANGGAAGANGA
CAAGNAGCAGCTGCTCCACCACAGGCCTGGGCGTGCCCGGCCATGGCGGCATGGCGNCTCCNGCNCNGCGNCGTCGGCGG
CGTTCNNCGGCGACGGCGCNCNGCNGCNGNGNCNANCAGCGGCGNNGGCANGAGGAGGNNGAGGCNAANNCGGTGGCGCA
GCACCGAGCTCCGGGACGNCGTGGAGATGNCNCANNNNNNNGAGAGGCGGACGCCGNAGTTGAGGTGGAGAGAGAAACGG
CNGCGCNAAAGGGAGAGAGGGCTCAGCCTCGGGGCTTTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24317.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis