Browse Element(s) Details


Os.7246.1.S1_s_at

Description gb:CB674913
DB_XREF= gi:29678638
DB_XREF=OSJNEe10E04.r
CLONE=OSJNEe10E04
TID=Os.7246.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.7246 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188446.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2756011/11HGA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27520OsAffx.28563.1.S1_x_at1/116+15583221..15584729hypothetical protein
LOC_Os06g27520OsAffx.16416.1.S1_x_at1/116+15583221..15584729hypothetical protein
LOC_Os06g27530OsAffx.24317.2.S1_x_at10/116+15586279..15587703hypothetical protein
LOC_Os06g27540OsAffx.30032.4.S1_at1/116+15588926..15593922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27550NANA6+15595294..15596839hypothetical protein
LOC_Os06g27560Os.7246.1.S1_s_at11/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27560Os.7246.2.S1_s_at10/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27570NANA6+15605249..15605884hypothetical protein
LOC_Os06g27580NANA6+15607455..15610167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27590OsAffx.15629.1.S1_at5/116+15610977..15611819expressed protein
LOC_Os06g27600NANA6+15617541..15619052retrotransposon protein, putative, unclassified
LOC_Os06g27610OsAffx.18868.4.S1_at11/116+15620655..15623546hypothetical protein
LOC_Os06g27610OsAffx.18868.5.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27610Os.50767.1.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27620OsAffx.27837.1.S1_at11/116+15626840..15627547hypothetical protein
LOC_Os06g27620OsAffx.6927.1.S1_at1/116+15626840..15627547hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7246.1.S1_s_at--476--3251Chr06:15602364..15602388 (25 bp)
CAACGGGCGCCGTGCTCGTACAGAT
LOC_Os06g27560
Os.7246.1.S1_s_at--245--4011Chr06:15602374..15602398 (25 bp)
CGTGCTCGTACAGATCGTGCCGTGG
LOC_Os06g27560
Os.7246.1.S1_s_at--539--7831Chr06:15602460..15602484 (25 bp)
GGTACGTCGAGTATTACGTCTCGGA
LOC_Os06g27560
Os.7246.1.S1_s_at--592--9951Chr06:15602510..15602534 (25 bp)
TACCCAAGGGACCACTACGTGTTCA
LOC_Os06g27560
Os.7246.1.S1_s_at--837--8971Chr06:15602589..15602613 (25 bp)
TGAAGCAGGACGTCACGGTGAATGT
LOC_Os06g27560
Os.7246.1.S1_s_at--613--5611Chr06:15602614..15602638 (25 bp)
GACAAGATTCAAGCCGTTCCTGCTC
LOC_Os06g27560
Os.7246.1.S1_s_at--1002--2931Chr06:15602639..15602663 (25 bp)
AAGGCGCTCGACGAATTGCAGGAAT
LOC_Os06g27560
Os.7246.1.S1_s_at--412--971Chr06:15602667..15602691 (25 bp)
AGGAGCGCCGTTTGATTGGTTTTGT
LOC_Os06g27560
Os.7246.1.S1_s_at--225--10831Chr06:15602688..15602712 (25 bp)
TTGTGTGGGCGTGGCTCGTCCATAA
LOC_Os06g27560
Os.7246.1.S1_s_at--1129--7531Chr06:15602698..15602722 (25 bp)
GTGGCTCGTCCATAAGTGGGATGTA
LOC_Os06g27560
Os.7246.1.S1_s_at--1024--8031Chr06:15602784..15602808 (25 bp)
GGAGATTCATGGTGTTTGTCATTCA
LOC_Os06g27560
Target Sequence 
CAACGGGCGCCGTGCTCGTACAGATCGTGCCGTGGGGCAAGATGGACTGGATGGCCACAAACNTTCTACGGGCAGCCGGC
GCGCGACATGCGGCTCCGGTACGTCGAGTATTACGTCTCGGAGGAGGAGACGACGCTCAAGGACAAGTACCCAAGGGACC
ACTACGTGTTCAAGGACCCCATGGCCATCCACGCGCAGGGCTGGCCGGCGCTCGCCGAGATCGTCATGAAGCAGGACGTC
ACGGTGAATGTGACAAGATTCAAGCCGTTCCTGCTCAAGGCGCTCGACGAATTGCAGGAATAGGAGGAGCGCCGTTTGAT
TGGTTTTGTGTGGGCGTGGCTCGTCCATAAGTGGGATGTAGGATGTTTTGATTTTATATTTATATTGTAATATTGAGTTA
ATCAATGTAATTTATTTCGTTGGAGATTCATGGTGTTTGTCATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7246.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis