Browse Element(s) Details


OsAffx.30032.4.S1_at

Description tigr:9640.m02868
TID=OsAffx.30032.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2971411/11hypothetical protein
LOC_Os12g2973011/11hypothetical protein
LOC_Os06g275401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29680OsAffx.19886.1.S1_at10/1112+17695399..17700073hypothetical protein
LOC_Os12g29690OsAffx.31932.1.S1_at11/1112+17701955..17706469NB-ARC domain containing protein
LOC_Os12g29700OsAffx.24866.1.S1_at9/1112+17711461..17716647retrotransposon protein, putative, unclassified
LOC_Os12g29720OsAffx.19888.1.S1_at11/1112+17716855..17718664hypothetical protein
LOC_Os12g29714OsAffx.30032.4.S1_at11/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.28563.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29714OsAffx.16416.1.S1_x_at1/1112+17720777..17721313hypothetical protein
LOC_Os12g29710OsAffx.31932.2.S1_at11/1112+17729944..17734518NB-ARC domain containing protein
LOC_Os12g29719OsAffx.19888.1.S1_at11/1112+17739371..17741180hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30032.4.S1_at--474--3552Chr12:17747885..17747909 (25 bp)
CATCTGACCTTCCAGGCGCATGGTG
LOC_Os12g29730
OsAffx.30032.4.S1_at--1094--10672Chr12:17747876..17747900 (25 bp)
TTCCAGGCGCATGGTGCACCTGATG
LOC_Os12g29730
OsAffx.30032.4.S1_at--168--5012Chr12:17747868..17747892 (25 bp)
GCATGGTGCACCTGATGTGCCCCAA
LOC_Os12g29730
OsAffx.30032.4.S1_at--1024--4473Chr06:15593415..15593439 (25 bp)
GCCCCAACCCCTGTCACATGATGAT
LOC_Os06g27540
OsAffx.30032.4.S1_at--285--832Chr12:17747734..17747758 (25 bp)
ATGGATTACGTCTCACCAAGAATGA
LOC_Os12g29730
OsAffx.30032.4.S1_at--914--9932Chr12:17747728..17747752 (25 bp)
TACGTCTCACCAAGAATGATCAAGC
LOC_Os12g29730
OsAffx.30032.4.S1_at--613--10212Chr12:17747702..17747726 (25 bp)
TATTATGGTCCAATTACGTGCAGCC
LOC_Os12g29730
OsAffx.30032.4.S1_at--640--7792Chr12:17747696..17747720 (25 bp)
GGTCCAATTACGTGCAGCCATACTA
LOC_Os12g29730
OsAffx.30032.4.S1_at--119--3192Chr12:17747692..17747716 (25 bp)
CAATTACGTGCAGCCATACTAGGAA
LOC_Os12g29730
OsAffx.30032.4.S1_at--639--10452Chr12:17747689..17747713 (25 bp)
TTACGTGCAGCCATACTAGGAAAAT
LOC_Os12g29730
OsAffx.30032.4.S1_at--387--9032Chr12:17747684..17747708 (25 bp)
TGCAGCCATACTAGGAAAATACAAC
LOC_Os12g29730
Target Sequence 
CATCTGACCTTCCAGGCGCATGGTGCACCTGATGTGCCCCAACCCCTGTCACATGATGATGAGCANATCCCAGCTACACT
TGAAGTAAACAAGGGTGATGGTTTACGTCATACGTCACATGGAGAAAATGAAGATGACGTAAACCAAGTTGATGGATTAC
GTCTCACCAAGAATGATCAAGCATATTATGGTCCAATTACGTGCAGCCATACTAGGAAAATACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30032.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis